Variant report

Variant	rs9639532
Chromosome Location	chr7:26314186-26314187
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26313227..26315137-chr7:26318290..26321269,2	K562	blood:
2	chr7:26313684..26316528-chr7:26331156..26333725,2	K562	blood:
3	chr7:26241958..26244328-chr7:26313470..26315628,2	K562	blood:
4	chr7:26226202..26228605-chr7:26311727..26314300,2	K562	blood:
5	chr7:26240189..26242389-chr7:26313126..26315933,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000086300	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10227678	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10236496	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10273457	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10464319	0.81[JPT][hapmap]
rs11525780	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12671127	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12700720	1.00[CEU][hapmap]
rs13222190	0.93[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13227895	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13228053	0.91[EUR][1000 genomes]
rs13229994	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13233547	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17153429	0.88[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28413943	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28653301	0.83[EUR][1000 genomes]
rs28682465	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28831402	0.85[EUR][1000 genomes]
rs33974860	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34272723	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34315589	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34695308	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34905204	0.81[AMR][1000 genomes]
rs4722590	0.80[CHB][hapmap]
rs55699431	0.83[EUR][1000 genomes]
rs62448361	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67157703	0.92[EUR][1000 genomes]
rs67229315	0.94[EUR][1000 genomes]
rs6942724	0.88[EUR][1000 genomes]
rs6953792	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6970361	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6975395	0.89[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7797558	0.90[EUR][1000 genomes]
rs9638833	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs972158	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1018352	chr7:26298095-26341825	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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