Variant report
Variant | rs6942724 |
---|---|
Chromosome Location | chr7:26313818-26313819 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:26313227..26315137-chr7:26318290..26321269,2 | K562 | blood: | |
2 | chr7:26313684..26316528-chr7:26331156..26333725,2 | K562 | blood: | |
3 | chr7:26241958..26244328-chr7:26313470..26315628,2 | K562 | blood: | |
4 | chr7:26226202..26228605-chr7:26311727..26314300,2 | K562 | blood: | |
5 | chr7:26240189..26242389-chr7:26313126..26315933,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000122566 | Chromatin interaction |
ENSG00000086300 | Chromatin interaction |
ENSG00000122565 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10227678 | 0.90[EUR][1000 genomes] |
rs10236496 | 0.90[EUR][1000 genomes] |
rs10273457 | 0.83[EUR][1000 genomes] |
rs10275783 | 0.80[EUR][1000 genomes] |
rs11525780 | 0.82[EUR][1000 genomes] |
rs12671127 | 0.88[EUR][1000 genomes] |
rs13228053 | 0.86[EUR][1000 genomes] |
rs13233547 | 0.84[EUR][1000 genomes] |
rs28413943 | 0.81[EUR][1000 genomes] |
rs34315589 | 0.87[EUR][1000 genomes] |
rs62448361 | 0.90[EUR][1000 genomes] |
rs67157703 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs67229315 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6953792 | 0.81[EUR][1000 genomes] |
rs6970361 | 0.90[EUR][1000 genomes] |
rs7797558 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9638833 | 0.89[EUR][1000 genomes] |
rs9639532 | 0.88[EUR][1000 genomes] |
rs9648323 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1021308 | chr7:26116605-26419720 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 166 gene(s) | inside rSNPs | diseases |
2 | nsv1018971 | chr7:26161228-26380361 | Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
3 | nsv1018352 | chr7:26298095-26341825 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv1029596 | chr7:26302739-26737913 | Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
5 | nsv538804 | chr7:26302739-26737913 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
No data |