Variant report

Variant	rs12700720
Chromosome Location	chr7:26318396-26318397
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10227678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236496	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10273457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11525780	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12671127	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13222190	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13227895	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13228053	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13229994	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13233547	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17153429	0.89[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28413943	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28653301	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28682465	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28831402	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs33974860	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34272723	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34315589	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34695308	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34905204	0.89[AMR][1000 genomes]
rs55699431	0.82[EUR][1000 genomes]
rs62448361	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67157703	0.94[EUR][1000 genomes]
rs67229315	0.92[EUR][1000 genomes]
rs6942724	0.90[EUR][1000 genomes]
rs6953792	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6970361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6975395	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7797558	0.92[EUR][1000 genomes]
rs9638833	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9639532	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9648323	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1018352	chr7:26298095-26341825	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26317200-26318400	Active TSS	Placenta	Placenta
2	chr7:26317400-26319400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr7:26317400-26319600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:26317800-26318600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr7:26318000-26318400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:26318000-26318400	Enhancers	HMEC	breast
7	chr7:26318000-26318400	Enhancers	Osteobl	bone
8	chr7:26318000-26318600	Enhancers	Adipose Nuclei	Adipose
9	chr7:26318200-26318400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:26318200-26318400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:26318200-26318400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:26318200-26318600	Enhancers	Primary B cells from cord blood	blood
13	chr7:26318200-26318600	Flanking Active TSS	HepG2	liver
14	chr7:26318200-26319200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:26318200-26319600	Enhancers	GM12878-XiMat	blood
16	chr7:26318200-26321800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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