Variant report
| Variant | rs34832413 |
|---|---|
| Chromosome Location | chr16:71344111-71344112 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71322082..71324513-chr16:71342713..71345948,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180917 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1002252 | 0.85[ASN][1000 genomes] |
| rs1018910 | 0.81[ASN][1000 genomes] |
| rs12149475 | 0.88[ASN][1000 genomes] |
| rs12708908 | 0.90[ASN][1000 genomes] |
| rs12708909 | 0.88[ASN][1000 genomes] |
| rs12708910 | 0.90[ASN][1000 genomes] |
| rs12708911 | 0.90[ASN][1000 genomes] |
| rs12918378 | 0.89[ASN][1000 genomes] |
| rs12919927 | 0.91[ASN][1000 genomes] |
| rs12929550 | 0.89[ASN][1000 genomes] |
| rs13330156 | 0.89[ASN][1000 genomes] |
| rs1593135 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2009763 | 0.88[ASN][1000 genomes] |
| rs2288048 | 0.91[ASN][1000 genomes] |
| rs28673886 | 0.90[ASN][1000 genomes] |
| rs2883935 | 0.85[ASN][1000 genomes] |
| rs3803704 | 0.90[ASN][1000 genomes] |
| rs4324135 | 0.88[ASN][1000 genomes] |
| rs4419068 | 0.96[ASN][1000 genomes] |
| rs4788786 | 0.86[ASN][1000 genomes] |
| rs4788787 | 0.89[ASN][1000 genomes] |
| rs6499492 | 0.88[ASN][1000 genomes] |
| rs6499493 | 0.89[ASN][1000 genomes] |
| rs7187450 | 0.89[ASN][1000 genomes] |
| rs7195330 | 0.89[ASN][1000 genomes] |
| rs8049333 | 0.91[ASN][1000 genomes] |
| rs8050933 | 0.89[ASN][1000 genomes] |
| rs8056169 | 0.87[ASN][1000 genomes] |
| rs8059792 | 0.88[ASN][1000 genomes] |
| rs8060653 | 0.90[ASN][1000 genomes] |
| rs8061378 | 0.88[ASN][1000 genomes] |
| rs8062240 | 0.89[ASN][1000 genomes] |
| rs8063629 | 0.83[ASN][1000 genomes] |
| rs9927032 | 0.87[ASN][1000 genomes] |
| rs9928675 | 0.91[ASN][1000 genomes] |
| rs9936354 | 0.89[ASN][1000 genomes] |
| rs9941262 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv482374 | chr16:71228600-71401617 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1062426 | chr16:71307180-71423400 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv528229 | chr16:71331728-71358937 | Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
