Variant report

Variant	rs8056169
Chromosome Location	chr16:71288886-71288887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71287182..71289773-chr16:71380797..71383659,2	MCF-7	breast:
2	chr16:71288537..71290996-chr16:71299715..71301664,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1002252	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1018910	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12149475	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12708908	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12708909	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12708910	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12708911	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12918378	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12919927	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12929550	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13330156	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1593135	0.93[ASN][1000 genomes]
rs2009763	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2288048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28673886	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2883935	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3096374	0.84[EUR][1000 genomes]
rs3114643	0.85[EUR][1000 genomes]
rs34832413	0.87[ASN][1000 genomes]
rs3803704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4324135	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4419068	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4788786	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4788787	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6416737	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6499492	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6499493	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7187450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7195330	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8049333	0.81[ASN][1000 genomes]
rs8050933	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8059792	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8060653	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8061378	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8062240	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8063629	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9927032	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9928675	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9936354	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9941262	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758429	chr16:70807122-71316983	Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv2758653	chr16:70807122-71316983	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1860	chr16:71269156-71313852	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71279400-71289000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:71283800-71289000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr16:71285000-71289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr16:71285400-71289200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr16:71285600-71289200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr16:71287800-71289000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr16:71288000-71291000	Enhancers	Fetal Muscle Leg	muscle
8	chr16:71288200-71289000	Enhancers	Primary T cells from cord blood	blood
9	chr16:71288200-71290200	Enhancers	Fetal Brain Male	brain
10	chr16:71288200-71290400	Enhancers	Brain Germinal Matrix	brain
11	chr16:71288400-71289600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:71288400-71289600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr16:71288400-71290000	Enhancers	Primary B cells from cord blood	blood
14	chr16:71288400-71290400	Enhancers	Fetal Brain Female	brain
15	chr16:71288600-71289400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr16:71288600-71289600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:71288600-71289800	Enhancers	Fetal Lung	lung
18	chr16:71288600-71290000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr16:71288600-71290000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr16:71288600-71290200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr16:71288600-71290200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr16:71288600-71290200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr16:71288600-71290200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr16:71288600-71290800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr16:71288800-71289000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr16:71288800-71289600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr16:71288800-71289600	Enhancers	Brain Hippocampus Middle	brain
28	chr16:71288800-71289600	Enhancers	Brain Substantia Nigra	brain
29	chr16:71288800-71289800	Enhancers	Primary B cells from peripheral blood	blood
30	chr16:71288800-71289800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr16:71288800-71290000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr16:71288800-71290000	Enhancers	Fetal Stomach	stomach
33	chr16:71288800-71290200	Enhancers	Brain Angular Gyrus	brain
34	chr16:71288800-71290200	Enhancers	Brain Anterior Caudate	brain
35	chr16:71288800-71290200	Enhancers	Brain Cingulate Gyrus	brain
36	chr16:71288800-71290400	Enhancers	HSMMtube	muscle

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