The 2.0 version of rSNPBase

Variant report

Variant rs34847985
Chromosome Location chr3:45949753-45949754
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:45932400-45960200 Weak transcription Fetal Intestine Small intestine
2 chr3:45934000-45960200 Weak transcription Right Ventricle heart
3 chr3:45936600-45950200 Genic enhancers Fetal Thymus thymus
4 chr3:45940000-45959800 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr3:45941200-45952400 Weak transcription Psoas Muscle Psoas
6 chr3:45941400-45960000 Weak transcription Adipose Nuclei Adipose
7 chr3:45943000-45961000 Weak transcription Brain Substantia Nigra brain
8 chr3:45943200-45950800 Genic enhancers Thymus Thymus
9 chr3:45943600-45961200 Weak transcription Gastric stomach
10 chr3:45946200-45956800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr3:45946200-45960400 Weak transcription Aorta Aorta
12 chr3:45946600-45950000 ZNF genes & repeats GM12878-XiMat blood
13 chr3:45947000-45960200 Weak transcription Lung lung
14 chr3:45947800-45949800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr3:45947800-45949800 Enhancers NH-A brain
16 chr3:45947800-45950000 Enhancers NHDF-Ad bronchial
17 chr3:45947800-45950200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
18 chr3:45947800-45950200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr3:45947800-45950200 Enhancers Duodenum Mucosa Duodenum
20 chr3:45947800-45956800 Transcr. at gene 5' and 3' Dnd41 blood
21 chr3:45948000-45949800 Enhancers NHLF lung
22 chr3:45948000-45950000 Weak transcription Primary B cells from cord blood blood
23 chr3:45948000-45950000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr3:45948000-45950000 Enhancers Osteobl bone
25 chr3:45948000-45950200 Enhancers Placenta Placenta
26 chr3:45948200-45949800 Enhancers Fetal Stomach stomach
27 chr3:45948200-45949800 Enhancers Stomach Mucosa stomach
28 chr3:45948200-45961000 Weak transcription Rectal Smooth Muscle rectum
29 chr3:45948400-45961600 Weak transcription Brain Inferior Temporal Lobe brain
30 chr3:45948600-45949800 Enhancers Fetal Muscle Leg muscle
31 chr3:45948600-45950000 Enhancers Fetal Muscle Trunk muscle
32 chr3:45948600-45951000 Weak transcription Primary B cells from peripheral blood blood
33 chr3:45948800-45949800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr3:45948800-45949800 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr3:45948800-45949800 Flanking Active TSS HSMM muscle
36 chr3:45948800-45950000 Enhancers Esophagus oesophagus
37 chr3:45948800-45950000 Flanking Active TSS HSMMtube muscle
38 chr3:45948800-45950600 Enhancers Primary T helper cells PMA-I stimulated --
39 chr3:45948800-45951800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
40 chr3:45948800-45960200 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr3:45949000-45949800 Enhancers Primary T killer memory cells from peripheral blood blood
42 chr3:45949000-45949800 Enhancers Small Intestine intestine
43 chr3:45949000-45950000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr3:45949000-45950000 Weak transcription Colonic Mucosa Colon
45 chr3:45949000-45950400 Enhancers Primary T killer naive cells fromperipheralblood blood
46 chr3:45949000-45950800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
47 chr3:45949200-45949800 Enhancers Primary T helper naive cells from peripheral blood blood
48 chr3:45949200-45949800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
49 chr3:45949200-45949800 Enhancers HepG2 liver
50 chr3:45949200-45950200 Enhancers K562 blood

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Last update: Aug 31, 2015