Variant report

Variant	rs9834860
Chromosome Location	chr3:45933647-45933648
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45922108..45924975-chr3:45933515..45935925,2	K562	blood:
2	chr3:45931810..45934147-chr3:45942830..45944362,2	K562	blood:
3	chr3:45932573..45935155-chr3:45936845..45938513,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1488371	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1860264	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1985356	0.82[ASN][1000 genomes]
rs28501674	0.81[ASN][1000 genomes]
rs34549672	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34847985	0.81[ASN][1000 genomes]
rs4683147	0.96[ASN][1000 genomes]
rs57295094	0.81[ASN][1000 genomes]
rs57527954	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61565453	0.81[ASN][1000 genomes]
rs62245098	0.81[ASN][1000 genomes]
rs62245102	0.81[ASN][1000 genomes]
rs6441930	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441932	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791859	0.81[ASN][1000 genomes]
rs6798047	0.89[ASN][1000 genomes]
rs7613548	0.89[ASN][1000 genomes]
rs7614342	0.82[ASN][1000 genomes]
rs875890	0.81[ASN][1000 genomes]
rs875891	0.81[ASN][1000 genomes]
rs9852270	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9862611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868455	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45923400-45948200	Weak transcription	Right Atrium	heart
2	chr3:45925200-45949600	Weak transcription	Pancreas	Pancrea
3	chr3:45925600-45947800	Genic enhancers	Dnd41	blood
4	chr3:45927800-45936400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:45928800-45936600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
6	chr3:45929800-45936600	Enhancers	Primary B cells from cord blood	blood
7	chr3:45929800-45936600	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:45932000-45935800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:45932000-45936200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:45932400-45933800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:45932400-45936200	Weak transcription	Hela-S3	cervix
12	chr3:45932400-45936600	Weak transcription	Fetal Stomach	stomach
13	chr3:45932400-45960200	Weak transcription	Fetal Intestine Small	intestine
14	chr3:45932600-45934000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:45932800-45933800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:45932800-45934200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:45932800-45934200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:45932800-45934200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:45933200-45934000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:45933200-45934200	Enhancers	Primary T cells from cord blood	blood
21	chr3:45933400-45933800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:45933600-45933800	Weak transcription	GM12878-XiMat	blood
23	chr3:45933600-45934000	Enhancers	Thymus	Thymus
24	chr3:45933600-45936000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:45933600-45937800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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