Variant report

Variant	rs6798047
Chromosome Location	chr3:45921771-45921772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1488371	0.89[ASN][1000 genomes]
rs1860264	0.99[ASN][1000 genomes]
rs34549672	0.87[ASN][1000 genomes]
rs4683147	0.88[ASN][1000 genomes]
rs57527954	0.89[ASN][1000 genomes]
rs6441930	0.99[ASN][1000 genomes]
rs6441932	0.99[ASN][1000 genomes]
rs6441933	0.89[ASN][1000 genomes]
rs7613548	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834860	0.89[ASN][1000 genomes]
rs9852270	0.99[ASN][1000 genomes]
rs9862611	0.89[ASN][1000 genomes]
rs9868455	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45912400-45922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:45914400-45922200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:45914800-45924000	Enhancers	Thymus	Thymus
4	chr3:45916200-45922200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:45916600-45925200	Genic enhancers	Dnd41	blood
6	chr3:45916800-45922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:45918400-45926000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:45918600-45922400	Enhancers	Fetal Thymus	thymus
9	chr3:45919000-45922800	Enhancers	GM12878-XiMat	blood
10	chr3:45920400-45922600	Enhancers	K562	blood
11	chr3:45920800-45924200	Enhancers	Primary T cells from cord blood	blood
12	chr3:45921000-45923200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:45921400-45923600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:45921600-45923200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:45921600-45923400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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