Variant report

Variant	rs6441932
Chromosome Location	chr3:45930222-45930223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1488371	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1860264	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34549672	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4683147	0.88[ASN][1000 genomes]
rs57527954	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441930	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6441933	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6798047	0.99[ASN][1000 genomes]
rs7613548	0.99[ASN][1000 genomes]
rs9834860	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9852270	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9862611	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9868455	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45923400-45932000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr3:45923400-45948200	Weak transcription	Right Atrium	heart
3	chr3:45925200-45949600	Weak transcription	Pancreas	Pancrea
4	chr3:45925600-45947800	Genic enhancers	Dnd41	blood
5	chr3:45926600-45932600	Enhancers	GM12878-XiMat	blood
6	chr3:45927800-45936400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:45928200-45931200	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr3:45928400-45932000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:45928400-45932000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:45928600-45932000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr3:45928800-45936600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
12	chr3:45929800-45936600	Enhancers	Primary B cells from cord blood	blood
13	chr3:45929800-45936600	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:45930000-45932600	Enhancers	Primary hematopoietic stem cells	blood
15	chr3:45930000-45933200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:45930200-45932000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:45930200-45932800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:45930200-45933000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:45930200-45933000	Active TSS	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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