Variant report

Variant	rs34850016
Chromosome Location	chr12:9925036-9925037
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9923247..9924749-chr12:9924893..9927763,2	MCF-7	breast:
2	chr12:9922886..9925340-chr12:9946588..9948897,3	K562	blood:
3	chr12:9924505..9927030-chr12:9928111..9932157,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10844424	0.89[AFR][1000 genomes]
rs10844449	0.89[AFR][1000 genomes]
rs10844476	0.89[AFR][1000 genomes]
rs10844765	0.88[ASN][1000 genomes]
rs10844780	0.96[ASN][1000 genomes]
rs10844781	0.96[ASN][1000 genomes]
rs10844782	0.96[ASN][1000 genomes]
rs11052327	0.89[AFR][1000 genomes]
rs11052342	0.89[AFR][1000 genomes]
rs11052434	0.89[AFR][1000 genomes]
rs11053051	0.96[ASN][1000 genomes]
rs11519377	0.89[AFR][1000 genomes]
rs11524523	0.89[AFR][1000 genomes]
rs12371982	0.89[AFR][1000 genomes]
rs12582616	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12810851	0.89[AFR][1000 genomes]
rs12812783	0.89[AFR][1000 genomes]
rs12815393	0.89[AFR][1000 genomes]
rs12817365	0.89[AFR][1000 genomes]
rs12824491	0.92[ASN][1000 genomes]
rs12825507	0.89[AFR][1000 genomes]
rs12828602	0.89[AFR][1000 genomes]
rs12828773	0.89[AFR][1000 genomes]
rs35237063	0.89[AFR][1000 genomes]
rs4763315	0.89[ASN][1000 genomes]
rs7954062	0.89[AFR][1000 genomes]
rs7969074	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8912	chr12:9923685-9926320	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9917600-9927200	Weak transcription	Esophagus	oesophagus
2	chr12:9918400-9925800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:9918400-9925800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:9918400-9925800	Weak transcription	Thymus	Thymus
5	chr12:9918400-9927200	Weak transcription	K562	blood
6	chr12:9918600-9925400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr12:9918600-9932000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr12:9920000-9925200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:9920200-9925800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr12:9921800-9925200	Weak transcription	Dnd41	blood
11	chr12:9922400-9925800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:9923000-9925600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr12:9923600-9925200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:9923600-9926400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr12:9924200-9925800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr12:9924400-9925200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:9924400-9926400	Enhancers	Primary T cells from cord blood	blood
18	chr12:9924400-9930200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr12:9924600-9925800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr12:9924600-9930600	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr12:9924800-9925200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr12:9924800-9929200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr12:9924800-9930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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