Variant report

Variant	rs10844780
Chromosome Location	chr12:9935582-9935583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9911894..9914789-chr12:9934195..9935805,2	K562	blood:
2	chr12:9930340..9931876-chr12:9935375..9937594,2	K562	blood:
3	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:

Variant related genes	Relation type
ENSG00000110848	Chromatin interaction

rs_ID	r²[population]
rs1008611	1.00[JPT][hapmap]
rs10466762	1.00[JPT][hapmap]
rs10743820	1.00[JPT][hapmap]
rs10743822	1.00[JPT][hapmap]
rs10772005	1.00[JPT][hapmap]
rs10772006	1.00[JPT][hapmap]
rs10772104	1.00[JPT][hapmap]
rs10772119	1.00[JPT][hapmap]
rs10772120	1.00[JPT][hapmap]
rs10844350	1.00[JPT][hapmap]
rs10844351	1.00[JPT][hapmap]
rs10844359	1.00[JPT][hapmap]
rs10844372	1.00[JPT][hapmap]
rs10844418	1.00[JPT][hapmap]
rs10844424	1.00[JPT][hapmap]
rs10844429	1.00[JPT][hapmap]
rs10844765	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844782	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052234	1.00[JPT][hapmap]
rs11052241	1.00[JPT][hapmap]
rs11052254	1.00[JPT][hapmap]
rs11052430	1.00[JPT][hapmap]
rs11053051	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12301123	0.95[EUR][1000 genomes]
rs12314225	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12366653	1.00[JPT][hapmap]
rs12368445	1.00[JPT][hapmap]
rs12578928	1.00[JPT][hapmap]
rs12810851	1.00[JPT][hapmap]
rs12822701	0.82[EUR][1000 genomes]
rs12823699	1.00[JPT][hapmap]
rs12824491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12825507	1.00[JPT][hapmap]
rs12828602	1.00[JPT][hapmap]
rs12830419	1.00[JPT][hapmap]
rs12831453	1.00[JPT][hapmap]
rs1560008	1.00[JPT][hapmap]
rs16913477	1.00[JPT][hapmap]
rs1863871	1.00[JPT][hapmap]
rs1990533	1.00[JPT][hapmap]
rs2114869	1.00[JPT][hapmap]
rs2114872	1.00[JPT][hapmap]
rs2401396	1.00[JPT][hapmap]
rs2401397	1.00[JPT][hapmap]
rs2401398	1.00[JPT][hapmap]
rs3176800	1.00[JPT][hapmap]
rs3176802	1.00[JPT][hapmap]
rs3176806	1.00[JPT][hapmap]
rs34850016	0.96[ASN][1000 genomes]
rs4763315	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4763316	0.99[EUR][1000 genomes]
rs4763317	0.82[EUR][1000 genomes]
rs6416258	1.00[JPT][hapmap]
rs6488065	1.00[JPT][hapmap]
rs704223	1.00[JPT][hapmap]
rs7132037	1.00[JPT][hapmap]
rs7302110	1.00[JPT][hapmap]
rs7302746	1.00[JPT][hapmap]
rs7304321	1.00[JPT][hapmap]
rs7304464	1.00[JPT][hapmap]
rs7309800	1.00[JPT][hapmap]
rs7310568	1.00[JPT][hapmap]
rs7310790	1.00[JPT][hapmap]
rs7310897	1.00[JPT][hapmap]
rs7311421	1.00[JPT][hapmap]
rs7311574	1.00[JPT][hapmap]
rs7311945	1.00[JPT][hapmap]
rs7312624	1.00[JPT][hapmap]
rs7961416	1.00[JPT][hapmap]
rs7962321	1.00[JPT][hapmap]
rs7964603	0.99[EUR][1000 genomes]
rs7972330	0.96[EUR][1000 genomes]
rs7974871	1.00[JPT][hapmap]
rs7978187	1.00[JPT][hapmap]
rs929615	1.00[JPT][hapmap]
rs9630265	1.00[JPT][hapmap]
rs982511	1.00[JPT][hapmap]
rs9919786	1.00[JPT][hapmap]

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9927600-9938800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:9928000-9935600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr12:9928400-9945400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:9929800-9936000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:9930000-9945400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr12:9930200-9945800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:9934400-9938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:9934600-9937600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr12:9934600-9938200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:9934600-9939800	Weak transcription	Primary T cells from cord blood	blood
11	chr12:9934600-9940000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr12:9935200-9941200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr12:9935400-9936000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr12:9935400-9936200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr12:9935400-9936600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr12:9935400-9938000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr12:9935400-9940400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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