Variant report

Variant	rs10772104
Chromosome Location	chr12:9897434-9897435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9884042..9890048-chr12:9890384..9897967,9	K562	blood:
2	chr12:9893977..9895808-chr12:9897315..9898952,2	K562	blood:
3	chr12:9895231..9897767-chr12:9915766..9917544,2	K562	blood:

Variant related genes	Relation type
ENSG00000184293	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1008611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10466762	1.00[JPT][hapmap]
rs1051065	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap];0.94[MKK][hapmap];0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10743820	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10743821	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10743822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10772005	1.00[JPT][hapmap]
rs10772006	1.00[JPT][hapmap]
rs10772119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10772120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10844350	1.00[JPT][hapmap]
rs10844351	1.00[JPT][hapmap]
rs10844359	1.00[JPT][hapmap]
rs10844372	1.00[JPT][hapmap]
rs10844418	1.00[JPT][hapmap]
rs10844424	1.00[JPT][hapmap]
rs10844429	1.00[JPT][hapmap]
rs10844676	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844780	1.00[JPT][hapmap]
rs11052234	1.00[JPT][hapmap]
rs11052241	1.00[JPT][hapmap]
rs11052254	1.00[JPT][hapmap]
rs11052430	1.00[JPT][hapmap]
rs11052718	0.81[ASN][1000 genomes]
rs11052771	0.91[ASN][1000 genomes]
rs11052785	0.81[ASN][1000 genomes]
rs11053051	1.00[JPT][hapmap]
rs12366653	1.00[JPT][hapmap]
rs12368445	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12578698	0.81[ASN][1000 genomes]
rs12578928	1.00[JPT][hapmap]
rs12582616	0.81[ASN][1000 genomes]
rs12810851	1.00[JPT][hapmap]
rs12823699	1.00[JPT][hapmap]
rs12824491	1.00[JPT][hapmap]
rs12825507	1.00[JPT][hapmap]
rs12828602	1.00[JPT][hapmap]
rs12830419	1.00[JPT][hapmap]
rs12831453	1.00[JPT][hapmap]
rs1560008	1.00[JPT][hapmap]
rs16913477	1.00[JPT][hapmap]
rs1863871	1.00[JPT][hapmap]
rs1990533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2114869	1.00[JPT][hapmap]
rs2114872	1.00[JPT][hapmap]
rs2192433	0.81[ASN][1000 genomes]
rs2192434	0.81[ASN][1000 genomes]
rs2192435	0.81[ASN][1000 genomes]
rs2401396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2401397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2401398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3176800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3176802	1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3176806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs34201389	0.81[ASN][1000 genomes]
rs4319592	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4405404	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4517613	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4763835	0.81[ASN][1000 genomes]
rs4763865	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763867	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61913428	0.81[ASN][1000 genomes]
rs6416258	1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6488065	1.00[JPT][hapmap]
rs704223	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap];0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7132037	1.00[JPT][hapmap]
rs7297324	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302110	1.00[JPT][hapmap]
rs7302746	1.00[JPT][hapmap]
rs7304321	1.00[JPT][hapmap]
rs7304464	1.00[JPT][hapmap]
rs7309800	1.00[JPT][hapmap]
rs7310568	1.00[JPT][hapmap]
rs7310790	1.00[JPT][hapmap]
rs7310897	1.00[JPT][hapmap]
rs7311421	1.00[JPT][hapmap]
rs7311574	1.00[JPT][hapmap]
rs7311945	1.00[JPT][hapmap]
rs7312624	0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961416	1.00[JPT][hapmap]
rs7962321	1.00[JPT][hapmap]
rs7969022	0.94[ASW][hapmap]
rs7971721	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974871	1.00[JPT][hapmap]
rs7978187	1.00[JPT][hapmap]
rs929615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9630265	1.00[JPT][hapmap]
rs982511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9919786	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv8911	chr12:9895900-9897691	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv976572	chr12:9896625-9906830	Genic enhancers ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10772104	KLRK1	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9890400-9897600	Weak transcription	HUVEC	blood vessel
2	chr12:9892800-9903200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:9893400-9910800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:9895600-9906000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:9895800-9898000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr12:9895800-9903200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:9896200-9903200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr12:9896400-9898000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr12:9896400-9903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:9896400-9911000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr12:9896600-9903000	Weak transcription	Primary B cells from cord blood	blood
12	chr12:9896800-9900800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:9896800-9902800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:9896800-9903000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr12:9896800-9903000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:9896800-9903200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr12:9896800-9903200	Weak transcription	GM12878-XiMat	blood
18	chr12:9896800-9903400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr12:9897200-9902800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr12:9897200-9903000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr12:9897400-9902800	Weak transcription	Primary T cells from cord blood	blood

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