Variant report

Variant	rs34853103
Chromosome Location	chr18:13289957-13289958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13286921..13290760-chr18:13293338..13296944,6	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1893978	1.00[EUR][1000 genomes]
rs1893979	1.00[EUR][1000 genomes]
rs34882133	0.93[AFR][1000 genomes]
rs7240656	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv2209	chr18:13276410-13316570	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13270000-13290000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:13270200-13290200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr18:13270200-13297600	Weak transcription	Colonic Mucosa	Colon
4	chr18:13274600-13301600	Weak transcription	Brain Substantia Nigra	brain
5	chr18:13274600-13302400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr18:13280600-13291200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr18:13280800-13299800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr18:13281200-13291800	Weak transcription	Adipose Nuclei	Adipose
9	chr18:13282800-13295200	Weak transcription	Dnd41	blood
10	chr18:13282800-13301600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr18:13285000-13294200	Weak transcription	Psoas Muscle	Psoas
12	chr18:13285000-13316200	Weak transcription	Aorta	Aorta
13	chr18:13285400-13290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr18:13285400-13292200	Weak transcription	Lung	lung
15	chr18:13285400-13296800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr18:13285400-13302600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr18:13286000-13292200	Weak transcription	Fetal Brain Female	brain
18	chr18:13286200-13290200	Weak transcription	Liver	Liver
19	chr18:13286200-13291200	Weak transcription	Fetal Brain Male	brain
20	chr18:13286400-13291600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr18:13287000-13290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr18:13287000-13291000	Weak transcription	Pancreas	Pancrea
23	chr18:13287200-13292000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr18:13287200-13298000	Weak transcription	Spleen	Spleen
25	chr18:13287800-13292000	Weak transcription	Brain Anterior Caudate	brain
26	chr18:13288400-13290000	Strong transcription	Primary T cells from cord blood	blood
27	chr18:13288400-13290400	Enhancers	Stomach Smooth Muscle	stomach
28	chr18:13288600-13290000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr18:13288600-13290200	Enhancers	Fetal Muscle Leg	muscle
30	chr18:13288600-13290200	Enhancers	Left Ventricle	heart
31	chr18:13288800-13290000	Enhancers	Colon Smooth Muscle	Colon
32	chr18:13288800-13290200	Enhancers	Fetal Stomach	stomach
33	chr18:13288800-13290400	Enhancers	Rectal Smooth Muscle	rectum
34	chr18:13288800-13290800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr18:13289000-13290000	Enhancers	GM12878-XiMat	blood
36	chr18:13289000-13290200	Enhancers	HSMMtube	muscle
37	chr18:13289400-13291400	Weak transcription	Brain Hippocampus Middle	brain
38	chr18:13289400-13291800	Weak transcription	Fetal Heart	heart
39	chr18:13289600-13290200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr18:13289600-13290400	Genic enhancers	Thymus	Thymus
41	chr18:13289600-13291200	Genic enhancers	Fetal Thymus	thymus
42	chr18:13289600-13291600	Enhancers	Gastric	stomach
43	chr18:13289800-13290000	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr18:13289800-13290200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr18:13289800-13290200	Enhancers	Right Atrium	heart
46	chr18:13289800-13290200	Genic enhancers	Right Ventricle	heart
47	chr18:13289800-13290600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr18:13289800-13290800	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr18:13289800-13291000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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