Variant report

Variant	rs7240656
Chromosome Location	chr18:13285160-13285161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13284936..13285757-chr18:13394689..13395619,3	MCF-7	breast:
2	chr18:13283569..13285472-chr18:13287547..13289155,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1893978	0.81[EUR][1000 genomes]
rs1893979	0.81[EUR][1000 genomes]
rs34853103	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34882133	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv2209	chr18:13276410-13316570	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13270000-13290000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:13270200-13288200	Weak transcription	Fetal Intestine Large	intestine
3	chr18:13270200-13290200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr18:13270200-13297600	Weak transcription	Colonic Mucosa	Colon
5	chr18:13272800-13289600	Weak transcription	Gastric	stomach
6	chr18:13274600-13301600	Weak transcription	Brain Substantia Nigra	brain
7	chr18:13274600-13302400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr18:13279600-13288600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr18:13280000-13289200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:13280600-13289000	Weak transcription	Brain Hippocampus Middle	brain
11	chr18:13280600-13291200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr18:13280800-13285600	Weak transcription	Liver	Liver
13	chr18:13280800-13286600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr18:13280800-13288400	Weak transcription	Primary T cells from cord blood	blood
15	chr18:13280800-13299800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr18:13281200-13291800	Weak transcription	Adipose Nuclei	Adipose
17	chr18:13281800-13285400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr18:13282800-13287000	Strong transcription	Fetal Thymus	thymus
19	chr18:13282800-13288800	Weak transcription	Fetal Stomach	stomach
20	chr18:13282800-13295200	Weak transcription	Dnd41	blood
21	chr18:13282800-13301600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr18:13283600-13286200	Enhancers	Brain Anterior Caudate	brain
23	chr18:13283800-13285400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr18:13283800-13285400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr18:13283800-13286200	Enhancers	Fetal Heart	heart
26	chr18:13284000-13285400	Enhancers	Right Atrium	heart
27	chr18:13284000-13285400	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr18:13284000-13286000	Enhancers	Fetal Brain Female	brain
29	chr18:13284200-13285200	Weak transcription	Spleen	Spleen
30	chr18:13284400-13285200	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr18:13284400-13285400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr18:13284400-13285600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr18:13284400-13285600	Enhancers	Fetal Muscle Leg	muscle
34	chr18:13284400-13286200	Enhancers	Fetal Brain Male	brain
35	chr18:13284400-13287000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr18:13284600-13285200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr18:13284600-13285200	Enhancers	Brain Cingulate Gyrus	brain
38	chr18:13284600-13285400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr18:13284600-13285600	Enhancers	Fetal Muscle Trunk	muscle
40	chr18:13284600-13285800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr18:13284600-13285800	Enhancers	Pancreas	Pancrea
42	chr18:13284600-13286000	Enhancers	Left Ventricle	heart
43	chr18:13284800-13285200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr18:13284800-13285200	Enhancers	NH-A	brain
45	chr18:13284800-13285400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr18:13284800-13285400	Enhancers	Lung	lung
47	chr18:13284800-13285400	Bivalent Enhancer	HSMMtube	muscle
48	chr18:13284800-13285800	Enhancers	Right Ventricle	heart
49	chr18:13284800-13289600	Strong transcription	Thymus	Thymus
50	chr18:13285000-13285400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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