Variant report

Variant	rs348624
Chromosome Location	chr1:162335256-162335257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:162335231-162335281	HepG2	liver:	n/a
2	chr1:162335231-162335281	HEEpiC	esophagus:	n/a
3	chr1:162335231-162335281	HCPEpiC	choroid plexus:	n/a
4	chr1:162335231-162335281	AG09309	skin:	n/a
5	chr1:162335231-162335281	MCF-7	breast:	n/a
6	chr1:162335231-162335281	AG04449	skin:	fetal
7	chr1:162335231-162335281	HMEC	breast:	n/a
8	chr1:162335231-162335281	ProgFib	skin:	n/a
9	chr1:162335231-162335281	MCF10A-Er-Src	breast:	n/a
10	chr1:162335231-162335281	PANC-1	pancreas:	n/a
11	chr1:162335231-162335281	Jurkat	blood:	n/a
12	chr1:162335231-162335281	AoSMC	blood vessel:	n/a
13	chr1:162335231-162335281	GM12891	blood:	n/a
14	chr1:162335231-162335281	HIPEpiC	eye:	n/a
15	chr1:162335231-162335281	HEK293	kidney:	embryo
16	chr1:162335231-162335281	HL-60	blood:	n/a
17	chr1:162335231-162335281	BE2_C	brain:	n/a
18	chr1:162335231-162335281	HNPCEpiC	eye:	n/a
19	chr1:162335231-162335281	AG04450	lung:	fetal
20	chr1:162335231-162335281	HCT-116	colon:	n/a
21	chr1:162335231-162335281	BJ	skin:	n/a
22	chr1:162335231-162335281	HUVEC	blood vessel:	n/a
23	chr1:162335231-162335281	NHDF-neo	bronchial:	n/a
24	chr1:162335231-162335281	IMR90	lung:	fetal
25	chr1:162335231-162335281	SKMC	muscle:	n/a
26	chr1:162335231-162335281	GM19239	blood:	n/a
27	chr1:162335231-162335281	PFSK-1	brain:	n/a
28	chr1:162335231-162335281	GM12892	blood:	n/a
29	chr1:162335231-162335281	NT2-D1	testis:	n/a
30	chr1:162335231-162335281	NH-A	brain:	n/a
31	chr1:162335231-162335281	GM12878	blood:	n/a
32	chr1:162335231-162335281	NHBE	bronchial:	n/a
33	chr1:162335231-162335281	CMK	blood:	n/a
34	chr1:162335231-162335281	HRPEpiC	eye:	n/a
35	chr1:162335231-162335281	ovcar-3	ovarian:	n/a
36	chr1:162335231-162335281	A549	lung:	n/a
37	chr1:162335231-162335281	U87	brain:	n/a
38	chr1:162335231-162335281	Hela-S3	cervix:	n/a
39	chr1:162335231-162335281	H1-hESC	embryonic stem cell:	embryo
40	chr1:162335231-162335281	SK-N-SH_RA	brain:	n/a
41	chr1:162335231-162335281	SAEC	small airway:	n/a
42	chr1:162335231-162335281	HAEpiC	amniotic membrane:	n/a
43	chr1:162335231-162335281	Hepatocyte	liver:	n/a
44	chr1:162335231-162335281	HCM	heart:	n/a
45	chr1:162335231-162335281	Caco-2	colon:	n/a
46	chr1:162335231-162335281	AG10803	skin:	n/a
47	chr1:162335231-162335281	LNCaP	prostate:	n/a
48	chr1:162335231-162335281	RPTEC	kidney:	n/a
49	chr1:162335231-162335281	SK-N-SH	brain:	n/a
50	chr1:162335231-162335281	HRCEpiC	kidney:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:162329633..162331232-chr1:162335048..162337197,2	K562	blood:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	NOS1AP	hsa-miR-320a	chr1:162335249-162335270

Variant related genes	Relation type
NOS1AP	CpG island
C1orf226	CpG island
ENSG00000198929	Chromatin interaction
NOS1AP	miRNA target site

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1504424	0.85[CHB][hapmap];0.89[ASN][1000 genomes]
rs164146	0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs164147	0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs164148	0.85[CHB][hapmap];0.80[CHD][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs164151	0.83[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1809973	0.83[ASN][1000 genomes]
rs1810354	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1964052	0.84[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821140	chr1:162047541-162389040	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1818566	chr1:162061209-162430009	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1823751	chr1:162063023-162344102	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1821064	chr1:162063023-162363991	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2756867	chr1:162064468-162360008	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv1822491	chr1:162064468-162369410	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	esv2758973	chr1:162064468-162503356	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	esv1822160	chr1:162064487-162386000	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	esv1824093	chr1:162064506-162363104	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	esv1823861	chr1:162064544-162363263	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	esv1824795	chr1:162065253-162363732	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	esv1822749	chr1:162066174-162363729	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	esv1815927	chr1:162066968-162366204	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
14	nsv872500	chr1:162067447-162367654	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
15	esv1818280	chr1:162072107-162503356	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
16	esv1818241	chr1:162075932-162363092	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
17	esv1818343	chr1:162075932-162363092	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
18	esv1821892	chr1:162075932-162363092	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
19	esv1818016	chr1:162075932-162363104	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
20	esv1818285	chr1:162075932-162363104	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
21	esv1817269	chr1:162076075-162361129	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
22	esv1818084	chr1:162076075-162363929	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
23	esv1818467	chr1:162076148-162399437	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
24	esv1816396	chr1:162076148-162503356	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
25	esv2757758	chr1:162076148-162503356	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
26	esv1816892	chr1:162076275-162360929	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
27	nsv818511	chr1:162076521-162345818	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
28	esv1817616	chr1:162076521-162360279	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
29	esv1818845	chr1:162076521-162363732	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
30	esv1819640	chr1:162076521-162363732	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
31	esv1823125	chr1:162076521-162363732	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
32	esv1815435	chr1:162076521-162363991	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
33	esv1817348	chr1:162076521-162363991	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
34	esv1822287	chr1:162080098-162366309	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
35	esv1817569	chr1:162080251-162366204	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
36	esv1823422	chr1:162083837-162359746	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
37	esv1822555	chr1:162083837-162360430	Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
38	esv1818019	chr1:162083837-162363732	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
39	esv1824385	chr1:162083837-162363991	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
40	esv34209	chr1:162089331-162377316	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
41	nsv1001264	chr1:162101576-162338327	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
42	nsv535183	chr1:162101576-162338327	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
43	esv1819157	chr1:162103916-162360008	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
44	nsv516482	chr1:162108119-162875195	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
45	esv1821095	chr1:162126444-162335424	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
46	nsv872501	chr1:162126444-162367654	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
47	esv1816004	chr1:162139692-162344102	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
48	esv1815234	chr1:162146831-162360430	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
49	esv1820076	chr1:162152248-162363991	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
50	esv1817833	chr1:162155986-162363732	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:162301400-162336400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:162302400-162336800	Weak transcription	Right Ventricle	heart
3	chr1:162311400-162336800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:162312000-162336800	Weak transcription	Left Ventricle	heart
5	chr1:162317200-162336800	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:162320400-162335800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:162321200-162357600	Weak transcription	Fetal Kidney	kidney
8	chr1:162321200-162358000	Weak transcription	Spleen	Spleen
9	chr1:162321400-162336600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:162322600-162337000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:162323400-162336600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:162323600-162337400	Weak transcription	Hela-S3	cervix
13	chr1:162323600-162358200	Weak transcription	Brain Substantia Nigra	brain
14	chr1:162323800-162336800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:162323800-162337600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:162323800-162361400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:162324000-162352600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:162324000-162355800	Weak transcription	Brain Anterior Caudate	brain
19	chr1:162324400-162341400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:162325600-162337200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:162325600-162359600	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:162325800-162336200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:162325800-162352600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:162326000-162341200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:162326200-162337400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:162326200-162352000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr1:162326200-162361400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:162326800-162346600	Weak transcription	Brain Angular Gyrus	brain
29	chr1:162327400-162361600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:162328200-162335600	Weak transcription	Aorta	Aorta
31	chr1:162329400-162336600	Weak transcription	Adipose Nuclei	Adipose
32	chr1:162329800-162339000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:162330400-162339000	Weak transcription	Stomach Mucosa	stomach
34	chr1:162330400-162346200	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:162330800-162336600	Weak transcription	Colonic Mucosa	Colon
36	chr1:162331400-162336800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:162332000-162337600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr1:162333600-162336400	Enhancers	Liver	Liver
39	chr1:162333800-162336400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr1:162334000-162346000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:162334200-162335400	Enhancers	HSMMtube	muscle
42	chr1:162334400-162336800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:162334600-162335800	Weak transcription	K562	blood
44	chr1:162334600-162340200	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr1:162334600-162340800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr1:162334600-162341200	Strong transcription	Fetal Brain Female	brain
47	chr1:162334800-162335400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:162334800-162335400	ZNF genes & repeats	Pancreas	Pancrea
49	chr1:162334800-162335600	ZNF genes & repeats	Lung	lung
50	chr1:162334800-162336000	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links