Variant report

Variant	rs34867153
Chromosome Location	chr17:38217136-38217137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38210788..38212744-chr17:38215352..38217931,2	MCF-7	breast:
2	chr17:38216131..38218859-chr17:38295458..38297078,2	K562	blood:
3	chr17:38208975..38210606-chr17:38215686..38218055,2	MCF-7	breast:
4	chr17:38216250..38218338-chr17:38278939..38280546,2	MCF-7	breast:
5	chr17:38216722..38220271-chr17:38254476..38257952,5	K562	blood:

Variant related genes	Relation type
ENSG00000108349	Chromatin interaction
ENSG00000126368	Chromatin interaction
ENSG00000008838	Chromatin interaction
ENSG00000188895	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61554907	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72834798	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908221	chr17:38216522-38289003	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38211000-38217400	Weak transcription	Gastric	stomach
2	chr17:38211200-38217200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:38211200-38217200	Weak transcription	Esophagus	oesophagus
4	chr17:38211200-38217200	Weak transcription	Pancreas	Pancrea
5	chr17:38211200-38217600	Weak transcription	Colonic Mucosa	Colon
6	chr17:38211200-38218600	Weak transcription	Left Ventricle	heart
7	chr17:38211200-38218600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr17:38211400-38217400	Weak transcription	Brain Anterior Caudate	brain
9	chr17:38211400-38217600	Weak transcription	Fetal Intestine Large	intestine
10	chr17:38211400-38218000	Weak transcription	Brain Hippocampus Middle	brain
11	chr17:38211400-38218200	Weak transcription	Primary T cells from cord blood	blood
12	chr17:38211400-38218200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr17:38211400-38218200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr17:38211400-38218200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr17:38211400-38218200	Weak transcription	Hela-S3	cervix
16	chr17:38211400-38218400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr17:38211400-38218400	Weak transcription	Brain Substantia Nigra	brain
18	chr17:38211400-38218400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr17:38213000-38217200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr17:38214000-38217400	Weak transcription	Brain Angular Gyrus	brain
21	chr17:38214600-38217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr17:38214600-38217400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr17:38214600-38217400	Weak transcription	Spleen	Spleen
24	chr17:38214600-38218000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr17:38214600-38218200	Weak transcription	Right Ventricle	heart
26	chr17:38214800-38217200	Weak transcription	Fetal Thymus	thymus
27	chr17:38214800-38217400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr17:38214800-38217400	Weak transcription	Fetal Intestine Small	intestine
29	chr17:38214800-38217400	Weak transcription	K562	blood
30	chr17:38214800-38218400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr17:38214800-38218600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:38214800-38218600	Weak transcription	HUVEC	blood vessel
33	chr17:38215000-38217200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr17:38215000-38217200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr17:38215000-38217400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr17:38215000-38218400	Weak transcription	Osteobl	bone
37	chr17:38215000-38218600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr17:38215200-38217400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr17:38215200-38217600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr17:38215200-38217600	Weak transcription	Stomach Mucosa	stomach
41	chr17:38215200-38218400	Weak transcription	Adipose Nuclei	Adipose
42	chr17:38215200-38218400	Weak transcription	Liver	Liver
43	chr17:38215200-38218600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr17:38215200-38218600	Weak transcription	Right Atrium	heart
45	chr17:38215400-38217200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr17:38215400-38217400	Weak transcription	Fetal Muscle Leg	muscle
47	chr17:38215400-38217800	Weak transcription	NHLF	lung
48	chr17:38215400-38218200	Weak transcription	Fetal Lung	lung
49	chr17:38215400-38218400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr17:38215400-38218400	Weak transcription	NHDF-Ad	bronchial

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