Variant report

Variant	rs72834798
Chromosome Location	chr17:38217299-38217300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr17:38217144-38217654	HEK293-T-REx	kidney:	n/a	chr17:38217202-38217211

No.	Distal block	Cell Line	Cell type
1	chr17:38210788..38212744-chr17:38215352..38217931,2	MCF-7	breast:
2	chr17:38216131..38218859-chr17:38295458..38297078,2	K562	blood:
3	chr17:38208975..38210606-chr17:38215686..38218055,2	MCF-7	breast:
4	chr17:38216250..38218338-chr17:38278939..38280546,2	MCF-7	breast:
5	chr17:38216722..38220271-chr17:38254476..38257952,5	K562	blood:

Variant related genes	Relation type
THRA	TF binding region
MED24	TF binding region
ENSG00000126368	Chromatin interaction
ENSG00000008838	Chromatin interaction
ENSG00000108349	Chromatin interaction
ENSG00000188895	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34867153	0.86[EUR][1000 genomes]
rs61554907	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908221	chr17:38216522-38289003	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38211000-38217400	Weak transcription	Gastric	stomach
2	chr17:38211200-38217600	Weak transcription	Colonic Mucosa	Colon
3	chr17:38211200-38218600	Weak transcription	Left Ventricle	heart
4	chr17:38211200-38218600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr17:38211400-38217400	Weak transcription	Brain Anterior Caudate	brain
6	chr17:38211400-38217600	Weak transcription	Fetal Intestine Large	intestine
7	chr17:38211400-38218000	Weak transcription	Brain Hippocampus Middle	brain
8	chr17:38211400-38218200	Weak transcription	Primary T cells from cord blood	blood
9	chr17:38211400-38218200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr17:38211400-38218200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:38211400-38218200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:38211400-38218200	Weak transcription	Hela-S3	cervix
13	chr17:38211400-38218400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr17:38211400-38218400	Weak transcription	Brain Substantia Nigra	brain
15	chr17:38211400-38218400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr17:38214000-38217400	Weak transcription	Brain Angular Gyrus	brain
17	chr17:38214600-38217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:38214600-38217400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr17:38214600-38217400	Weak transcription	Spleen	Spleen
20	chr17:38214600-38218000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr17:38214600-38218200	Weak transcription	Right Ventricle	heart
22	chr17:38214800-38217400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr17:38214800-38217400	Weak transcription	Fetal Intestine Small	intestine
24	chr17:38214800-38217400	Weak transcription	K562	blood
25	chr17:38214800-38218400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr17:38214800-38218600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr17:38214800-38218600	Weak transcription	HUVEC	blood vessel
28	chr17:38215000-38217400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr17:38215000-38218400	Weak transcription	Osteobl	bone
30	chr17:38215000-38218600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr17:38215200-38217400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr17:38215200-38217600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr17:38215200-38217600	Weak transcription	Stomach Mucosa	stomach
34	chr17:38215200-38218400	Weak transcription	Adipose Nuclei	Adipose
35	chr17:38215200-38218400	Weak transcription	Liver	Liver
36	chr17:38215200-38218600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr17:38215200-38218600	Weak transcription	Right Atrium	heart
38	chr17:38215400-38217400	Weak transcription	Fetal Muscle Leg	muscle
39	chr17:38215400-38217800	Weak transcription	NHLF	lung
40	chr17:38215400-38218200	Weak transcription	Fetal Lung	lung
41	chr17:38215400-38218400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr17:38215400-38218400	Weak transcription	NHDF-Ad	bronchial
43	chr17:38215600-38218200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr17:38216000-38217600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr17:38216000-38218200	Enhancers	Fetal Brain Male	brain
46	chr17:38216000-38218600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr17:38216200-38217400	Enhancers	Fetal Brain Female	brain
48	chr17:38216400-38217400	Weak transcription	Colon Smooth Muscle	Colon
49	chr17:38216400-38217600	Active TSS	Brain Germinal Matrix	brain
50	chr17:38216600-38218600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links