Variant report

Variant	rs34868598
Chromosome Location	chr15:59389768-59389769
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59388228..59393746-chr15:59399093..59403821,6	K562	blood:
2	chr15:59389408..59391765-chr15:59397121..59399577,2	K562	blood:

Variant related genes	Relation type
ENSG00000157456	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1014443	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10518995	0.88[ASN][1000 genomes]
rs34193148	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34395806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71478699	0.88[ASN][1000 genomes]
rs901478	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:59354000-59390600	Strong transcription	Primary B cells from peripheral blood	blood
3	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:59355400-59392800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:59355600-59392800	Strong transcription	Liver	Liver
6	chr15:59355600-59396600	Weak transcription	Fetal Heart	heart
7	chr15:59359400-59396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:59364800-59392600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:59365800-59390600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:59366400-59390600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:59367400-59390800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:59367600-59390200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:59367600-59390600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:59367800-59389800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:59368200-59389800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:59368200-59390200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:59368200-59392800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:59368600-59389800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:59371600-59392800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:59372400-59390400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:59373000-59390400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:59374000-59396800	Weak transcription	Ovary	ovary
23	chr15:59374200-59396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr15:59374200-59396800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:59374200-59396800	Weak transcription	Right Ventricle	heart
26	chr15:59374400-59396800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:59376000-59389800	Strong transcription	Primary B cells from cord blood	blood
28	chr15:59376000-59389800	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:59377200-59397000	Weak transcription	Gastric	stomach
30	chr15:59377400-59390200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:59378200-59389800	Strong transcription	Primary hematopoietic stem cells	blood
32	chr15:59378600-59390000	Strong transcription	Dnd41	blood
33	chr15:59378800-59390200	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:59379400-59396600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:59380000-59390600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:59380200-59389800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr15:59380800-59390400	Strong transcription	Adipose Nuclei	Adipose
38	chr15:59380800-59392800	Strong transcription	A549	lung
39	chr15:59381000-59390400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr15:59381400-59392000	Weak transcription	Aorta	Aorta
41	chr15:59382000-59390400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:59383200-59389800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:59383200-59389800	Strong transcription	HSMM	muscle
44	chr15:59384200-59396400	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:59384200-59396600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr15:59384200-59396600	Weak transcription	NHLF	lung
47	chr15:59384200-59396800	Weak transcription	Lung	lung
48	chr15:59384200-59396800	Weak transcription	Pancreas	Pancrea
49	chr15:59384800-59396400	Weak transcription	K562	blood
50	chr15:59385200-59392200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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