Variant report

Variant	rs901478
Chromosome Location	chr15:59425158-59425159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59415408..59417117-chr15:59424612..59426614,2	K562	blood:
2	chr15:59406804..59410339-chr15:59423052..59425717,4	K562	blood:
3	chr15:59406055..59408881-chr15:59424217..59427371,3	K562	blood:

Variant related genes	Relation type
ENSG00000157456	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10518995	0.88[CHB][hapmap]
rs16953412	0.84[LWK][hapmap]
rs28383542	0.95[LWK][hapmap];0.86[MKK][hapmap]
rs34395806	0.84[AMR][1000 genomes]
rs34868598	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59397800-59450000	Weak transcription	Small Intestine	intestine
2	chr15:59398000-59425600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:59398000-59426000	Weak transcription	Lung	lung
4	chr15:59398000-59426200	Weak transcription	HSMMtube	muscle
5	chr15:59398000-59426400	Weak transcription	Left Ventricle	heart
6	chr15:59398000-59427200	Weak transcription	Pancreas	Pancrea
7	chr15:59398000-59427400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:59398000-59462000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:59399600-59437000	Strong transcription	Fetal Thymus	thymus
10	chr15:59401200-59439800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr15:59405800-59426000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:59409600-59438600	Weak transcription	Primary T cells from cord blood	blood
13	chr15:59410600-59426600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:59410800-59425800	Weak transcription	Placenta	Placenta
15	chr15:59413400-59427600	Weak transcription	Fetal Heart	heart
16	chr15:59414600-59426000	Weak transcription	Gastric	stomach
17	chr15:59418200-59425200	Weak transcription	HUVEC	blood vessel
18	chr15:59421000-59437600	Strong transcription	Dnd41	blood
19	chr15:59421400-59433600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:59421400-59453400	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:59421800-59432200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:59421800-59433200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:59422000-59426200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:59422000-59430400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:59422200-59438800	Strong transcription	Thymus	Thymus
26	chr15:59422200-59451200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:59422600-59425400	ZNF genes & repeats	GM12878-XiMat	blood
28	chr15:59422600-59426800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:59422600-59428200	Strong transcription	K562	blood
30	chr15:59422600-59431200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr15:59422600-59431200	Strong transcription	HepG2	liver
32	chr15:59422600-59432800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:59422600-59432800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:59422600-59439600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:59422600-59440200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:59422600-59440600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr15:59422600-59447600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr15:59422600-59451000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr15:59422800-59425200	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr15:59422800-59427400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr15:59422800-59427600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:59422800-59428200	Strong transcription	Fetal Lung	lung
43	chr15:59422800-59433600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:59422800-59436400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:59422800-59437000	Strong transcription	Fetal Muscle Leg	muscle
46	chr15:59423000-59426200	Weak transcription	Fetal Kidney	kidney
47	chr15:59423000-59428000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr15:59423000-59430400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:59423000-59432800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr15:59423000-59433200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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