Variant report

Variant	rs34870025
Chromosome Location	chr5:178374713-178374714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13172044	0.88[ASN][1000 genomes]
rs55666251	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
2	chr5:178368800-178377000	Weak transcription	Psoas Muscle	Psoas
3	chr5:178369000-178378400	Weak transcription	NHDF-Ad	bronchial
4	chr5:178369000-178378800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:178369000-178380200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
7	chr5:178369400-178374800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
9	chr5:178369600-178377400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr5:178370000-178376200	Weak transcription	Placenta	Placenta
11	chr5:178370000-178378400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:178371000-178376000	Strong transcription	Fetal Muscle Leg	muscle
13	chr5:178371000-178376000	Strong transcription	Placenta Amnion	Placenta Amnion
14	chr5:178371200-178374800	Strong transcription	Brain Cingulate Gyrus	brain
15	chr5:178371200-178375800	ZNF genes & repeats	Aorta	Aorta
16	chr5:178371200-178379200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr5:178371400-178375800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:178371600-178375600	ZNF genes & repeats	Esophagus	oesophagus
19	chr5:178371800-178378000	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr5:178372200-178375600	Strong transcription	Right Ventricle	heart
21	chr5:178372400-178374800	ZNF genes & repeats	Gastric	stomach
22	chr5:178372400-178375800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:178372400-178375800	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr5:178372400-178376400	ZNF genes & repeats	Pancreas	Pancrea
25	chr5:178372600-178375600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:178372600-178377400	Weak transcription	Fetal Heart	heart
27	chr5:178372800-178375600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:178372800-178375600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:178373000-178374800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
30	chr5:178373000-178375600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:178373000-178375600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr5:178373200-178375800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:178373200-178375800	ZNF genes & repeats	Ovary	ovary
34	chr5:178373200-178385800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:178373400-178376200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr5:178373600-178374800	Strong transcription	Brain Hippocampus Middle	brain
37	chr5:178373600-178375800	Strong transcription	Rectal Smooth Muscle	rectum
38	chr5:178373600-178377200	Strong transcription	Brain Germinal Matrix	brain
39	chr5:178373800-178374800	Strong transcription	Fetal Brain Male	brain
40	chr5:178374000-178374800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
41	chr5:178374000-178374800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
42	chr5:178374000-178375000	Strong transcription	Fetal Lung	lung
43	chr5:178374000-178375400	Strong transcription	Osteobl	bone
44	chr5:178374000-178375800	Strong transcription	Fetal Kidney	kidney
45	chr5:178374200-178374800	ZNF genes & repeats	Brain Angular Gyrus	brain
46	chr5:178374200-178375600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
47	chr5:178374200-178375600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
48	chr5:178374200-178375600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
49	chr5:178374200-178375800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:178374200-178375800	ZNF genes & repeats	Left Ventricle	heart

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