Variant report

Variant rs55666251
Chromosome Location chr5:178372071-178372072
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:178353800-178374800 ZNF genes & repeats Liver Liver
2 chr5:178366400-178372600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr5:178367000-178374600 ZNF genes & repeats Spleen Spleen
4 chr5:178368800-178377000 Weak transcription Psoas Muscle Psoas
5 chr5:178369000-178372800 Weak transcription Brain Inferior Temporal Lobe brain
6 chr5:178369000-178373800 Weak transcription Brain Substantia Nigra brain
7 chr5:178369000-178374000 Weak transcription Osteobl bone
8 chr5:178369000-178374400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
9 chr5:178369000-178378400 Weak transcription NHDF-Ad bronchial
10 chr5:178369000-178378800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
11 chr5:178369000-178380200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr5:178369000-178384800 ZNF genes & repeats Fetal Stomach stomach
13 chr5:178369200-178372200 Weak transcription Right Ventricle heart
14 chr5:178369200-178373000 Weak transcription Colon Smooth Muscle Colon
15 chr5:178369400-178374800 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin01 Skin
16 chr5:178369400-178418200 ZNF genes & repeats Fetal Brain Female brain
17 chr5:178369600-178372200 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr5:178369600-178373200 ZNF genes & repeats Fetal Lung lung
19 chr5:178369600-178373600 ZNF genes & repeats Brain Germinal Matrix brain
20 chr5:178369600-178374400 Strong transcription Stomach Smooth Muscle stomach
21 chr5:178369600-178377400 Strong transcription Fetal Muscle Trunk muscle
22 chr5:178369800-178373600 Weak transcription Rectal Smooth Muscle rectum
23 chr5:178370000-178376200 Weak transcription Placenta Placenta
24 chr5:178370000-178378400 Weak transcription Muscle Satellite Cultured Cells --
25 chr5:178370200-178374200 Strong transcription Brain Anterior Caudate brain
26 chr5:178370400-178372400 Strong transcription Pancreas Pancrea
27 chr5:178371000-178373200 Strong transcription Ovary ovary
28 chr5:178371000-178376000 Strong transcription Fetal Muscle Leg muscle
29 chr5:178371000-178376000 Strong transcription Placenta Amnion Placenta Amnion
30 chr5:178371200-178372600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr5:178371200-178372800 ZNF genes & repeats Fetal Kidney kidney
32 chr5:178371200-178373600 ZNF genes & repeats Brain Hippocampus Middle brain
33 chr5:178371200-178374200 Strong transcription Brain Angular Gyrus brain
34 chr5:178371200-178374800 Strong transcription Brain Cingulate Gyrus brain
35 chr5:178371200-178375800 ZNF genes & repeats Aorta Aorta
36 chr5:178371200-178379200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
37 chr5:178371400-178373000 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr5:178371400-178375800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr5:178371600-178373000 ZNF genes & repeats Fetal Brain Male brain
40 chr5:178371600-178375600 ZNF genes & repeats Esophagus oesophagus
41 chr5:178371800-178372600 Enhancers Fetal Heart heart
42 chr5:178371800-178372600 Weak transcription Left Ventricle heart
43 chr5:178371800-178373000 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
44 chr5:178371800-178373400 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
45 chr5:178371800-178373400 ZNF genes & repeats Fetal Intestine Large intestine
46 chr5:178371800-178378000 ZNF genes & repeats Fetal Intestine Small intestine
47 chr5:178372000-178372400 ZNF genes & repeats Skeletal Muscle Female skeletal muscle

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