Variant report

Variant	rs34875919
Chromosome Location	chr4:96171681-96171682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96170637..96175521-chr4:96175696..96180371,8	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17352477	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67374207	0.94[EUR][1000 genomes]
rs72672779	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72672790	0.88[EUR][1000 genomes]
rs72672792	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72674508	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72674509	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
2	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
3	chr4:96154600-96172000	Weak transcription	Brain Substantia Nigra	brain
4	chr4:96154600-96176800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:96162000-96176800	Weak transcription	Brain Anterior Caudate	brain
6	chr4:96163800-96177200	Weak transcription	Aorta	Aorta
7	chr4:96164000-96177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:96166400-96172400	Weak transcription	Spleen	Spleen
9	chr4:96166400-96177200	Weak transcription	Left Ventricle	heart
10	chr4:96169400-96171800	Weak transcription	Brain Angular Gyrus	brain
11	chr4:96169600-96171800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:96169800-96172000	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:96170600-96172600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:96171200-96172200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr4:96171200-96176800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:96171400-96171800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:96171400-96172000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:96171400-96172200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:96171400-96172400	Enhancers	K562	blood
20	chr4:96171400-96184600	Weak transcription	Fetal Lung	lung
21	chr4:96171600-96172400	Enhancers	HMEC	breast
22	chr4:96171600-96172600	Enhancers	Liver	Liver
23	chr4:96171600-96173000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr4:96171600-96181600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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