Variant report

Variant	rs72674508
Chromosome Location	chr4:96177555-96177556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96170637..96175521-chr4:96175696..96180371,8	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17352477	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34875919	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67374207	1.00[EUR][1000 genomes]
rs72672779	0.81[EUR][1000 genomes]
rs72672790	0.81[EUR][1000 genomes]
rs72672792	0.81[EUR][1000 genomes]
rs72674509	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
2	chr4:96171400-96184600	Weak transcription	Fetal Lung	lung
3	chr4:96171600-96181600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:96171800-96187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:96172000-96177800	Enhancers	Brain Hippocampus Middle	brain
6	chr4:96174800-96177800	Enhancers	Brain Cingulate Gyrus	brain
7	chr4:96176600-96177600	Enhancers	HSMM	muscle
8	chr4:96176600-96177600	Enhancers	HSMMtube	muscle
9	chr4:96176600-96177800	Flanking Active TSS	K562	blood
10	chr4:96176600-96178200	Enhancers	HUVEC	blood vessel
11	chr4:96176800-96177600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:96176800-96177600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:96176800-96177600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:96176800-96177600	Flanking Active TSS	Osteobl	bone
15	chr4:96176800-96177800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:96177000-96177600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:96177000-96177600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:96177000-96177600	Enhancers	NHDF-Ad	bronchial
19	chr4:96177000-96177800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:96177000-96184000	Weak transcription	Ovary	ovary
21	chr4:96177200-96177600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:96177200-96177600	Enhancers	NHLF	lung
23	chr4:96177200-96177800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:96177200-96177800	Enhancers	Brain Anterior Caudate	brain
25	chr4:96177400-96177600	Enhancers	Brain Angular Gyrus	brain
26	chr4:96177400-96177800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:96177400-96177800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr4:96177400-96177800	Enhancers	Brain Substantia Nigra	brain
29	chr4:96177400-96177800	Enhancers	NH-A	brain

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