Variant report

Variant rs34879399
Chromosome Location chr17:38645331-38645332
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38627400-38646200 Weak transcription Gastric stomach
2 chr17:38636000-38647000 Genic enhancers Breast Myoepithelial Primary Cells Breast
3 chr17:38636000-38648200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
4 chr17:38636000-38649600 Genic enhancers HMEC breast
5 chr17:38637400-38645600 Weak transcription Spleen Spleen
6 chr17:38637400-38648200 Genic enhancers NHEK skin
7 chr17:38638200-38646400 Weak transcription H9 Cell Line embryonic stem cell
8 chr17:38638600-38646200 Weak transcription Colonic Mucosa Colon
9 chr17:38638800-38646000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr17:38639200-38645400 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr17:38639200-38645400 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr17:38639400-38645400 Weak transcription Primary B cells from cord blood blood
13 chr17:38640800-38646400 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr17:38641000-38645400 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr17:38641000-38646600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr17:38641000-38648800 Enhancers Primary T helper cells PMA-I stimulated --
17 chr17:38641200-38646200 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr17:38641200-38646400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr17:38641400-38646200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr17:38642000-38647000 Enhancers Colon Smooth Muscle Colon
21 chr17:38642000-38647800 Enhancers Fetal Stomach stomach
22 chr17:38642000-38654400 Weak transcription Duodenum Mucosa Duodenum
23 chr17:38642800-38645400 Weak transcription iPS-15b Cell Line embryonic stem cell
24 chr17:38642800-38645600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr17:38642800-38646000 Enhancers Primary T cells from cord blood blood
26 chr17:38642800-38646600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr17:38643000-38645800 Genic enhancers Esophagus oesophagus
28 chr17:38643000-38647000 Weak transcription Fetal Kidney kidney
29 chr17:38643000-38654200 Weak transcription Stomach Mucosa stomach
30 chr17:38643200-38646400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
31 chr17:38643200-38646600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr17:38643200-38647000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr17:38643400-38645400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr17:38643400-38645400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr17:38643400-38645400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr17:38643400-38646200 Weak transcription HepG2 liver
37 chr17:38643400-38646200 Weak transcription K562 blood
38 chr17:38643400-38648200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
39 chr17:38643600-38646200 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr17:38643600-38646400 Weak transcription Adipose Nuclei Adipose
41 chr17:38643800-38646200 Weak transcription NH-A brain
42 chr17:38643800-38656000 Weak transcription Right Atrium heart
43 chr17:38644000-38646400 Genic enhancers Hela-S3 cervix
44 chr17:38644000-38648600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
45 chr17:38644200-38646000 Weak transcription Brain Substantia Nigra brain
46 chr17:38644200-38646200 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr17:38644200-38646200 Genic enhancers A549 lung
48 chr17:38644200-38646400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr17:38644200-38648400 Enhancers Fetal Thymus thymus
50 chr17:38644400-38645400 Weak transcription Lung lung

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