Variant report

Variant	rs9303289
Chromosome Location	chr17:38647473-38647474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38640863..38643911-chr17:38644729..38647819,3	MCF-7	breast:
2	chr17:38646024..38649623-chr17:38649808..38652805,4	K562	blood:
3	chr17:38632398..38634313-chr17:38645464..38649244,3	MCF-7	breast:
4	chr17:38646147..38648547-chr17:38673997..38676989,2	MCF-7	breast:
5	chr17:38645169..38647955-chr17:38652977..38654925,2	K562	blood:
6	chr17:38640983..38649598-chr17:38652430..38659338,11	MCF-7	breast:
7	chr17:38642999..38645925-chr17:38647445..38650025,2	K562	blood:
8	chr17:38647398..38649761-chr17:38676727..38678938,2	K562	blood:
9	chr17:38642192..38648064-chr17:38648142..38651157,5	K562	blood:
10	chr17:38645404..38649775-chr17:38650279..38653252,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131746	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12942610	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1901187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2290206	0.98[ASN][1000 genomes]
rs2290207	0.97[ASN][1000 genomes]
rs34377860	0.98[ASN][1000 genomes]
rs34453034	0.98[ASN][1000 genomes]
rs34456044	0.98[ASN][1000 genomes]
rs34879399	0.98[ASN][1000 genomes]
rs35260012	0.98[ASN][1000 genomes]
rs3764424	0.98[ASN][1000 genomes]
rs7214311	0.89[ASN][1000 genomes]
rs8079359	0.82[AFR][1000 genomes]
rs8081819	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv908224	chr17:38638251-38651447	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38636000-38648200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr17:38636000-38649600	Genic enhancers	HMEC	breast
3	chr17:38637400-38648200	Genic enhancers	NHEK	skin
4	chr17:38641000-38648800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr17:38642000-38647800	Enhancers	Fetal Stomach	stomach
6	chr17:38642000-38654400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr17:38643000-38654200	Weak transcription	Stomach Mucosa	stomach
8	chr17:38643400-38648200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:38643800-38656000	Weak transcription	Right Atrium	heart
10	chr17:38644000-38648600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:38644200-38648400	Enhancers	Fetal Thymus	thymus
12	chr17:38644400-38648200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:38644400-38648400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr17:38644600-38648600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr17:38644800-38648000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr17:38645000-38648600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr17:38645200-38647800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr17:38645400-38647600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr17:38645400-38647800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:38645400-38647800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr17:38645400-38647800	Enhancers	Rectal Smooth Muscle	rectum
22	chr17:38645400-38648200	Enhancers	Primary B cells from cord blood	blood
23	chr17:38645400-38648400	Enhancers	Primary B cells from peripheral blood	blood
24	chr17:38645400-38648600	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr17:38645400-38648600	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr17:38645600-38647800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:38645600-38648000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr17:38645600-38648200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr17:38645800-38648400	Enhancers	Esophagus	oesophagus
30	chr17:38646000-38647600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr17:38646000-38648600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr17:38646000-38648800	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr17:38646200-38647600	Enhancers	NHLF	lung
34	chr17:38646200-38647800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr17:38646200-38647800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr17:38646200-38647800	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr17:38646200-38647800	Enhancers	Thymus	Thymus
38	chr17:38646200-38647800	Transcr. at gene 5' and 3'	A549	lung
39	chr17:38646200-38647800	Enhancers	K562	blood
40	chr17:38646200-38648200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr17:38646200-38648400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr17:38646200-38648600	Enhancers	Colonic Mucosa	Colon
43	chr17:38646200-38648600	Genic enhancers	Placenta	Placenta
44	chr17:38646200-38649000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr17:38646400-38647600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr17:38646400-38647600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr17:38646400-38647600	Enhancers	Brain Anterior Caudate	brain
48	chr17:38646400-38647600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr17:38646400-38647800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr17:38646400-38648400	Enhancers	H9 Cell Line	embryonic stem cell

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