Variant report

Variant	rs34883798
Chromosome Location	chr14:72849980-72849981
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12887870	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110829	0.86[AMR][1000 genomes]
rs34755616	0.86[AMR][1000 genomes]
rs35291137	0.86[AMR][1000 genomes]
rs4899431	0.86[AMR][1000 genomes]
rs4899432	0.86[AMR][1000 genomes]
rs4903011	0.86[AMR][1000 genomes]
rs66507723	0.86[AMR][1000 genomes]
rs8015237	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72836000-72851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:72849000-72850400	Enhancers	Brain Germinal Matrix	brain
3	chr14:72849000-72851000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:72849600-72850000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72849800-72850400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links