Variant report

Variant	rs8015237
Chromosome Location	chr14:72789052-72789053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1002105	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs10483844	1.00[CEU][hapmap];0.82[AFR][1000 genomes]
rs12147284	0.82[AFR][1000 genomes]
rs12883470	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12895250	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12897241	0.93[AMR][1000 genomes]
rs1402065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1520327	0.93[AMR][1000 genomes]
rs1520329	0.93[AMR][1000 genomes]
rs1589301	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17110829	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17111029	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17111047	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1879288	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs2079501	0.86[CHB][hapmap]
rs2238193	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2238198	0.80[CHB][hapmap]
rs2238200	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2238203	0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2238208	0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2238209	0.93[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2238210	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs2239226	1.00[CEU][hapmap]
rs2239236	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2239240	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2239242	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2239245	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs2239252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2239253	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2239254	0.86[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2239256	0.86[CHB][hapmap]
rs2239262	0.93[AMR][1000 genomes]
rs2283386	1.00[CEU][hapmap]
rs2283387	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2283389	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2283393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2283394	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2283395	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2283399	0.93[AMR][1000 genomes]
rs2283400	0.93[AMR][1000 genomes]
rs34122902	0.93[AMR][1000 genomes]
rs34373542	0.83[EUR][1000 genomes]
rs34755616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34883798	0.86[AMR][1000 genomes]
rs35129690	0.82[AFR][1000 genomes]
rs35133217	0.83[EUR][1000 genomes]
rs35291137	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35413081	0.93[AMR][1000 genomes]
rs4324071	0.82[EUR][1000 genomes]
rs4899429	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs4899431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903005	0.93[AMR][1000 genomes]
rs4903008	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs4903011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55954287	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56263585	0.93[AMR][1000 genomes]
rs66507723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66823874	0.93[AMR][1000 genomes]
rs67838629	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7155750	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7156265	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs8013850	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8015476	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8019126	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72781200-72789400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72786000-72792400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links