Variant report

Variant	rs1002105
Chromosome Location	chr14:72760708-72760709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:72760434..72761186-chr14:72883286..72884169,5	MCF-7	breast:
2	chr14:72758845..72761499-chr14:72887079..72888301,15	MCF-7	breast:
3	chr14:72398262..72400525-chr14:72758927..72761647,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182732	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12881198	0.85[EUR][1000 genomes]
rs12883470	0.89[ASN][1000 genomes]
rs12895250	0.88[EUR][1000 genomes]
rs1402065	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1520329	0.84[CHB][hapmap]
rs1589301	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17109589	0.82[EUR][1000 genomes]
rs17110829	0.86[CHB][hapmap]
rs1879288	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs1981604	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2079501	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.92[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2238197	1.00[GIH][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2238198	0.80[EUR][1000 genomes]
rs2238200	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2238203	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2238208	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2238209	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2238210	0.86[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs2239252	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs2239253	0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs2239254	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2239256	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2283393	0.86[CHB][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs2283394	0.86[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs2283395	0.86[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs34373542	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35133217	0.80[EUR][1000 genomes]
rs4324071	0.89[ASN][1000 genomes]
rs4899429	0.86[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs4899431	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs4899432	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4903008	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4903011	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs55954287	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67838629	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs699359	0.80[EUR][1000 genomes]
rs7156265	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7342516	0.88[YRI][hapmap]
rs8013850	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8015237	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs8015476	0.83[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs847246	0.80[EUR][1000 genomes]
rs847247	0.80[EUR][1000 genomes]
rs847248	0.80[EUR][1000 genomes]
rs847249	0.80[EUR][1000 genomes]
rs847251	1.00[GIH][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs847256	0.80[EUR][1000 genomes]
rs847257	0.80[EUR][1000 genomes]
rs847260	1.00[GIH][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs847261	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72760400-72763400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr14:72760600-72761000	Enhancers	Ovary	ovary

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