Variant report

Variant	rs8015476
Chromosome Location	chr14:72789425-72789426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1002105	0.83[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs12895250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1402065	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17110829	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1879288	1.00[CHB][hapmap]
rs1981604	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2079501	0.84[CHB][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2238197	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2238198	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2238200	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2238203	0.84[CHB][hapmap]
rs2238208	0.85[CHB][hapmap]
rs2238209	0.92[CHB][hapmap]
rs2238210	1.00[CHB][hapmap]
rs2239237	0.88[CEU][hapmap]
rs2239252	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs2239253	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs2239254	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2239256	0.84[CHB][hapmap]
rs2283393	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2283394	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2283395	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs34755616	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35291137	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899429	1.00[CHB][hapmap]
rs4899431	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4899432	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4903008	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs4903011	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66507723	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7156265	0.84[CHB][hapmap]
rs72726116	0.85[EUR][1000 genomes]
rs8015237	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72786000-72792400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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