Variant report

Variant	rs1402065
Chromosome Location	chr14:72796845-72796846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72794559..72797059-chr14:72803417..72805844,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1002105	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10483844	1.00[CEU][hapmap]
rs12883470	0.82[EUR][1000 genomes]
rs12891167	1.00[ASW][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap]
rs12895250	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1520329	1.00[ASW][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs1589301	0.86[EUR][1000 genomes]
rs17110829	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111029	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17111047	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1879288	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs2079501	1.00[ASW][hapmap];0.86[CHB][hapmap]
rs2238193	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2238197	0.82[ASN][1000 genomes]
rs2238200	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs2238203	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs2238208	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs2238209	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs2238210	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2238232	0.90[GIH][hapmap]
rs2238233	0.90[GIH][hapmap]
rs2238237	1.00[ASW][hapmap];0.90[GIH][hapmap]
rs2239226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MKK][hapmap]
rs2239236	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs2239240	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2239242	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2239245	0.86[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2239252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2239253	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2239254	1.00[ASW][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2239256	0.85[CHB][hapmap]
rs2239260	1.00[GIH][hapmap]
rs2283386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MKK][hapmap]
rs2283387	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MKK][hapmap];0.85[EUR][1000 genomes]
rs2283389	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs2283393	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2283394	1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2283395	1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs34373542	0.83[EUR][1000 genomes]
rs34755616	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35133217	0.83[EUR][1000 genomes]
rs35291137	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4324071	0.82[EUR][1000 genomes]
rs4899429	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4899431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4903008	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4903011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55954287	0.86[EUR][1000 genomes]
rs66507723	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67838629	0.86[EUR][1000 genomes]
rs7155750	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs7156265	1.00[ASW][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.86[EUR][1000 genomes]
rs8013850	0.86[EUR][1000 genomes]
rs8015237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8015476	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8019126	1.00[CEU][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72794400-72798200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:72794600-72797800	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:72796400-72798200	Weak transcription	Lung	lung
4	chr14:72796400-72801000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72796600-72799800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:72796600-72801400	Enhancers	Cortex derived primary cultured neurospheres	brain

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