Variant report

Variant	rs2239236
Chromosome Location	chr14:72809691-72809692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10483844	1.00[CEU][hapmap];0.80[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12147284	0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12891167	1.00[ASW][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap]
rs1402065	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs1520329	1.00[ASW][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17110829	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs17111029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111047	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2079501	1.00[ASW][hapmap]
rs2238193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2238197	0.90[CHD][hapmap]
rs2238200	0.81[EUR][1000 genomes]
rs2238210	1.00[ASW][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs2238232	0.90[GIH][hapmap]
rs2238233	0.90[GIH][hapmap]
rs2238237	1.00[ASW][hapmap];0.90[GIH][hapmap]
rs2239226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2239240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239245	0.86[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2239252	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2239253	1.00[ASW][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs2239254	1.00[ASW][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs2239260	1.00[GIH][hapmap]
rs2283386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2283387	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2283389	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2283394	1.00[GIH][hapmap];0.85[TSI][hapmap]
rs2283395	1.00[GIH][hapmap];0.85[TSI][hapmap]
rs34034575	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34062036	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34755616	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35129690	1.00[AFR][1000 genomes]
rs35291137	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35981409	0.87[EUR][1000 genomes]
rs4899429	1.00[ASW][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs4899431	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4899432	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4903011	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55662698	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66507723	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7155750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156265	1.00[ASW][hapmap];1.00[GIH][hapmap]
rs8015237	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs8019126	1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv2757573	chr14:72802736-72819684	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759995	chr14:72802736-72819684	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv819274	chr14:72806021-72810798	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv442345	chr14:72807404-72810136	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1838508	chr14:72807404-72810140	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72808000-72809800	Enhancers	Spleen	Spleen
2	chr14:72809200-72810200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr14:72809600-72810400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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