Variant report

Variant	rs2239245
Chromosome Location	chr14:72802323-72802324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72800415..72803046-chr14:72803047..72804639,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10483844	0.87[CEU][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12147284	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1402065	0.86[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1520329	0.85[EUR][1000 genomes]
rs17110829	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17111029	0.87[CEU][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17111047	0.87[CEU][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2238193	0.87[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2238197	0.82[EUR][1000 genomes]
rs2238198	0.82[EUR][1000 genomes]
rs2238200	0.83[EUR][1000 genomes]
rs2239226	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2239236	0.86[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2239240	0.87[CEU][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2239242	0.87[CEU][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2239252	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2283386	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2283387	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2283389	0.86[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34034575	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34062036	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34755616	0.90[EUR][1000 genomes]
rs35291137	0.92[EUR][1000 genomes]
rs35981409	0.85[EUR][1000 genomes]
rs4899431	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs4899432	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs4903011	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs55662698	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66507723	0.90[EUR][1000 genomes]
rs7155750	0.86[CEU][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8015237	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs8019126	0.86[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72797600-72804800	Enhancers	Fetal Lung	lung
2	chr14:72799200-72804200	Weak transcription	Spleen	Spleen
3	chr14:72801000-72803000	Weak transcription	Fetal Stomach	stomach
4	chr14:72801000-72807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72801400-72803800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:72801600-72802800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:72802000-72802400	Enhancers	H1 Cell Line	embryonic stem cell

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