Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72800415..72803046-chr14:72803047..72804639,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1002105	0.80[EUR][1000 genomes]
rs10483844	0.82[EUR][1000 genomes]
rs12895250	0.91[EUR][1000 genomes]
rs17110829	0.80[CHB][hapmap]
rs1879288	0.80[CHB][hapmap]
rs1981604	0.80[EUR][1000 genomes]
rs2079501	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2238197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2238200	0.80[CHB][hapmap]
rs2239226	0.82[EUR][1000 genomes]
rs2239237	0.90[CEU][hapmap]
rs2239245	0.82[EUR][1000 genomes]
rs2239252	0.80[CHB][hapmap]
rs2283386	0.82[EUR][1000 genomes]
rs2283389	0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs2283393	0.91[CEU][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34034575	0.82[EUR][1000 genomes]
rs34062036	0.82[EUR][1000 genomes]
rs35981409	0.82[EUR][1000 genomes]
rs4899431	0.82[JPT][hapmap]
rs4899432	0.80[CHB][hapmap]
rs4903008	0.83[CEU][hapmap]
rs4903011	0.80[CHB][hapmap]
rs55662698	0.82[EUR][1000 genomes]
rs72726116	0.93[EUR][1000 genomes]
rs8015237	0.80[CHB][hapmap]
rs8015476	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8019126	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72797600-72804800	Enhancers	Fetal Lung	lung
2	chr14:72798800-72802200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:72799000-72801800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:72799000-72802200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:72799200-72802000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr14:72799200-72804200	Weak transcription	Spleen	Spleen
7	chr14:72800200-72801600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:72800600-72801600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr14:72800600-72801600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:72801000-72802200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr14:72801000-72803000	Weak transcription	Fetal Stomach	stomach
12	chr14:72801000-72807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:72801400-72801600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr14:72801400-72801800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:72801400-72803800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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