Variant report

Variant	rs4903008
Chromosome Location	chr14:72770254-72770255
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1002105	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11848731	0.86[YRI][hapmap]
rs12881198	0.85[EUR][1000 genomes]
rs12883470	0.83[ASN][1000 genomes]
rs12895250	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1402065	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs1520329	0.84[CHB][hapmap]
rs1589301	0.82[EUR][1000 genomes]
rs17109589	0.82[EUR][1000 genomes]
rs17110829	0.86[CHB][hapmap]
rs1879288	0.86[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs1981604	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2079501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2238197	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2238198	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2238200	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2238203	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2238208	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2238209	0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs2238210	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs2239252	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs2239253	0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs2239254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2239256	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2239262	0.81[CEU][hapmap]
rs2283393	0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs2283394	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2283395	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34373542	0.80[EUR][1000 genomes]
rs35133217	0.80[EUR][1000 genomes]
rs4324071	0.87[ASN][1000 genomes]
rs4899429	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs4899431	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs4899432	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4903011	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs55954287	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67838629	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs699359	0.80[EUR][1000 genomes]
rs7141883	0.86[YRI][hapmap]
rs7156265	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8013850	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8015237	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs8015476	0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs847246	0.80[EUR][1000 genomes]
rs847247	0.80[EUR][1000 genomes]
rs847248	0.80[EUR][1000 genomes]
rs847249	0.80[EUR][1000 genomes]
rs847251	0.80[EUR][1000 genomes]
rs847256	0.80[EUR][1000 genomes]
rs847257	0.80[EUR][1000 genomes]
rs847260	0.80[EUR][1000 genomes]
rs847261	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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