Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11846195	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847074	1.00[AMR][1000 genomes]
rs11847945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851057	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1568404	0.90[YRI][hapmap]
rs17110207	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34536760	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903008	0.86[YRI][hapmap]
rs7141883	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143881	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs7147174	1.00[AMR][1000 genomes]
rs7151115	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152452	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302883	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302890	1.00[AMR][1000 genomes]
rs73302900	1.00[AMR][1000 genomes]
rs73304904	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304927	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304934	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304947	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304959	0.96[AFR][1000 genomes]
rs73304976	0.82[AFR][1000 genomes]
rs8007579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72775000-72778800	Enhancers	Fetal Kidney	kidney
2	chr14:72775000-72779400	Enhancers	Fetal Lung	lung
3	chr14:72775400-72780200	Enhancers	Colon Smooth Muscle	Colon
4	chr14:72775400-72782800	Enhancers	Fetal Stomach	stomach
5	chr14:72775600-72779400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72775800-72780200	Enhancers	Ovary	ovary
7	chr14:72776000-72778600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:72776400-72779000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:72776600-72779000	Enhancers	Brain Germinal Matrix	brain
10	chr14:72776800-72777800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:72776800-72778400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:72776800-72779400	Weak transcription	Fetal Heart	heart
13	chr14:72777000-72778000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:72777400-72778000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr14:72777400-72778200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr14:72777400-72778400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:72777400-72778600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr14:72777600-72778000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr14:72777600-72779400	Weak transcription	Left Ventricle	heart

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