Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11846195	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847945	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848731	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs11851057	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1568404	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17110207	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34536760	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7141883	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143754	0.91[AFR][1000 genomes]
rs7147174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151115	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151667	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152452	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302877	1.00[AFR][1000 genomes]
rs73302883	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304927	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304934	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304947	1.00[AMR][1000 genomes]
rs8007579	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv983983	chr14:72741726-72748921	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72732600-72751000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:72745000-72747800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:72745400-72748400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72747600-72752600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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