Variant report

Variant	rs17110207
Chromosome Location	chr14:72742235-72742236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72740515..72742453-chr14:72744658..72746675,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11846195	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847945	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848731	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851057	0.92[ASW][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1568404	0.86[LWK][hapmap];1.00[YRI][hapmap]
rs34536760	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7141883	0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7142983	0.84[ASW][hapmap]
rs7143754	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7143881	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147174	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151115	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151667	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152452	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302877	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73302883	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73302900	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304927	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304934	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7342516	1.00[ASN][1000 genomes]
rs7342517	1.00[ASN][1000 genomes]
rs8007579	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv983983	chr14:72741726-72748921	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72723400-72747600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72732600-72751000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:72741200-72745200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links