Variant report

Variant	rs7142983
Chromosome Location	chr14:72796764-72796765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11846819	0.87[AFR][1000 genomes]
rs11851057	0.92[ASW][hapmap]
rs17110207	0.84[ASW][hapmap]
rs73304959	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304980	0.92[AFR][1000 genomes]
rs8021617	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72794400-72798200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:72794600-72797800	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:72796400-72798200	Weak transcription	Lung	lung
4	chr14:72796400-72801000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:72796600-72799800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:72796600-72801400	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links