Variant report

Variant	rs73304904
Chromosome Location	chr14:72752168-72752169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11846195	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847945	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848731	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17110207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34536760	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7141883	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143754	0.87[AFR][1000 genomes]
rs7143881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147174	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151115	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151667	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152452	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302877	0.95[AFR][1000 genomes]
rs73302883	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302900	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304927	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304934	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007579	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72747600-72752600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72749400-72752800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr14:72751000-72752800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:72751600-72752200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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