Variant report

Variant	rs73304927
Chromosome Location	chr14:72758603-72758604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11846195	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847074	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847945	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848731	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17110207	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34536760	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7141883	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143881	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147174	1.00[AMR][1000 genomes]
rs7151115	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151667	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152452	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302877	0.83[AFR][1000 genomes]
rs73302883	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302890	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302900	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304904	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304934	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304947	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304959	0.84[AFR][1000 genomes]
rs8007579	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72756600-72759200	Enhancers	Fetal Brain Male	brain
2	chr14:72756800-72759600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:72757200-72758800	Weak transcription	Left Ventricle	heart
4	chr14:72757800-72759400	Active TSS	Stomach Smooth Muscle	stomach
5	chr14:72758000-72759600	Enhancers	Fetal Stomach	stomach
6	chr14:72758600-72758800	Enhancers	Brain Anterior Caudate	brain
7	chr14:72758600-72758800	Enhancers	Fetal Brain Female	brain
8	chr14:72758600-72759200	Enhancers	Adipose Nuclei	Adipose
9	chr14:72758600-72759600	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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