Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:72398725..72399242-chr14:72758933..72759467,2	MCF-7	breast:
2	chr14:72570534..72571227-chr14:72759065..72759718,2	MCF-7	breast:
3	chr14:72570215..72571451-chr14:72758982..72759729,6	MCF-7	breast:
4	chr14:72490629..72491408-chr14:72758856..72759783,5	MCF-7	breast:
5	chr14:72758845..72761499-chr14:72887079..72888301,15	MCF-7	breast:
6	chr14:72398262..72400525-chr14:72758927..72761647,3	MCF-7	breast:
7	chr14:72489255..72491408-chr14:72757396..72759777,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182732	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11846195	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847074	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847945	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848731	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851057	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1568404	0.90[YRI][hapmap]
rs17110207	0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34536760	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903008	0.86[YRI][hapmap]
rs7143881	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147174	1.00[AMR][1000 genomes]
rs7151115	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151667	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302877	0.86[AFR][1000 genomes]
rs73302883	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302900	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304904	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304934	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304959	0.86[AFR][1000 genomes]
rs8007579	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72756800-72759600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:72758000-72759600	Enhancers	Fetal Stomach	stomach
3	chr14:72758600-72759600	Enhancers	Ovary	ovary

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