Variant report

Variant	rs72726116
Chromosome Location	chr14:72846851-72846852
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10483844	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12147284	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12895250	0.85[EUR][1000 genomes]
rs2238197	0.93[EUR][1000 genomes]
rs2238198	0.93[EUR][1000 genomes]
rs2239226	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2283386	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2283387	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2283393	0.82[EUR][1000 genomes]
rs34034575	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34062036	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35981409	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55662698	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8015476	0.85[EUR][1000 genomes]
rs8019126	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72836000-72851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:72846800-72848000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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