Variant report

Variant	rs34885709
Chromosome Location	chr1:168282015-168282016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16860424	1.00[AMR][1000 genomes]
rs56756222	1.00[AMR][1000 genomes]
rs73031924	1.00[AMR][1000 genomes]
rs73031973	1.00[AMR][1000 genomes]
rs73033959	1.00[AMR][1000 genomes]
rs73033962	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168254600-168284800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:168254800-168289200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:168255200-168285400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:168257600-168284800	Weak transcription	Esophagus	oesophagus
5	chr1:168259000-168283800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:168259000-168294000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:168263000-168282800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:168263000-168289600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:168264400-168284800	Weak transcription	Left Ventricle	heart
10	chr1:168265400-168287000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:168267000-168289400	Weak transcription	Fetal Lung	lung
12	chr1:168268600-168285000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:168270200-168283600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:168270400-168290000	Weak transcription	Brain Anterior Caudate	brain
15	chr1:168270400-168291400	Weak transcription	Right Atrium	heart
16	chr1:168270800-168289000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:168271400-168289000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:168271400-168289800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:168271400-168289800	Weak transcription	HSMMtube	muscle
20	chr1:168271400-168289800	Weak transcription	NHDF-Ad	bronchial
21	chr1:168271600-168289800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:168271800-168283600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:168271800-168290000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:168272000-168285800	Weak transcription	Thymus	Thymus
25	chr1:168272200-168288600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr1:168272200-168289000	Weak transcription	Fetal Intestine Small	intestine
27	chr1:168272200-168290400	Weak transcription	Fetal Intestine Large	intestine
28	chr1:168273800-168284000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr1:168274600-168282600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:168274600-168285600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr1:168275000-168282200	Weak transcription	A549	lung
32	chr1:168275800-168287200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:168276200-168283600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr1:168276800-168289400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr1:168278200-168282600	Weak transcription	Liver	Liver
36	chr1:168278200-168285200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr1:168278400-168283200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr1:168278400-168283800	Weak transcription	Fetal Muscle Leg	muscle
39	chr1:168278400-168289800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:168279000-168285200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:168279200-168288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:168280200-168284800	Strong transcription	Primary B cells from cord blood	blood
43	chr1:168280600-168285000	Strong transcription	Aorta	Aorta
44	chr1:168280800-168283000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr1:168280800-168283600	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr1:168281200-168283800	Strong transcription	Ovary	ovary
47	chr1:168281200-168285000	Strong transcription	Primary T cells from cord blood	blood
48	chr1:168281400-168284200	Strong transcription	Stomach Smooth Muscle	stomach
49	chr1:168281800-168282400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr1:168281800-168282400	Strong transcription	Pancreas	Pancrea

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