Variant report

Variant	rs73033962
Chromosome Location	chr1:168250798-168250799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:168250732..168252476-chr1:168254412..168256571,2	K562	blood:
2	chr1:168247400..168250978-chr1:168276166..168279443,3	K562	blood:
3	chr1:168248871..168250978-chr1:168276482..168279443,2	K562	blood:

Variant related genes	Relation type
ENSG00000143178	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16860424	1.00[AMR][1000 genomes]
rs34885709	1.00[AMR][1000 genomes]
rs56756222	1.00[AMR][1000 genomes]
rs61151739	0.91[AFR][1000 genomes]
rs73031924	1.00[AMR][1000 genomes]
rs73031958	0.91[AFR][1000 genomes]
rs73031973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168226200-168277400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:168231800-168260400	Weak transcription	Aorta	Aorta
3	chr1:168232400-168262400	Weak transcription	Ovary	ovary
4	chr1:168234400-168254600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:168234600-168262200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:168234600-168266600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:168235000-168277400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:168235400-168276600	Weak transcription	Primary T cells from cord blood	blood
9	chr1:168235600-168255400	Weak transcription	Primary B cells from cord blood	blood
10	chr1:168236200-168254400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:168236200-168256200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:168237600-168277600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:168239800-168270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:168240000-168282000	Weak transcription	Spleen	Spleen
15	chr1:168244600-168262600	Weak transcription	Lung	lung
16	chr1:168246400-168252800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr1:168247200-168269000	Weak transcription	Fetal Intestine Small	intestine
18	chr1:168247600-168250800	Enhancers	Fetal Lung	lung
19	chr1:168248600-168254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:168249600-168262400	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:168250000-168251000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:168250600-168251600	Flanking Active TSS	K562	blood

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