Variant report

Variant	rs73031958
Chromosome Location	chr1:168228541-168228542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168226233..168228548-chr1:168230283..168233130,3	K562	blood:
2	chr1:168226932..168228978-chr1:168230306..168233130,2	K562	blood:

Variant related genes	Relation type
ENSG00000206880	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12060580	1.00[EUR][1000 genomes]
rs12078900	1.00[EUR][1000 genomes]
rs12080143	1.00[EUR][1000 genomes]
rs12080866	1.00[EUR][1000 genomes]
rs12082173	1.00[EUR][1000 genomes]
rs12091379	1.00[EUR][1000 genomes]
rs56292766	1.00[EUR][1000 genomes]
rs57210996	1.00[EUR][1000 genomes]
rs57768763	1.00[EUR][1000 genomes]
rs60707311	1.00[EUR][1000 genomes]
rs61151739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73031924	0.82[AFR][1000 genomes]
rs73031973	0.91[AFR][1000 genomes]
rs73031987	1.00[EUR][1000 genomes]
rs73033959	0.91[AFR][1000 genomes]
rs73033962	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872526	chr1:168142489-168238710	Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168213600-168229800	Weak transcription	HSMMtube	muscle
2	chr1:168216000-168230000	Weak transcription	Fetal Kidney	kidney
3	chr1:168216800-168229200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:168219800-168230200	Weak transcription	Osteobl	bone
5	chr1:168219800-168235200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:168220000-168228800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:168220000-168229800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:168220200-168229800	Weak transcription	Pancreas	Pancrea
9	chr1:168220200-168230000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:168220200-168230200	Weak transcription	NH-A	brain
11	chr1:168220200-168230200	Weak transcription	NHLF	lung
12	chr1:168220200-168231000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:168220200-168232800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:168220200-168234200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:168220200-168235000	Weak transcription	Colonic Mucosa	Colon
16	chr1:168220400-168230000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:168220400-168231400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:168220400-168235800	Weak transcription	Spleen	Spleen
19	chr1:168220600-168229800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:168221600-168230400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:168221800-168233800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr1:168224200-168228800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:168224400-168230000	Weak transcription	HSMM	muscle
24	chr1:168224800-168229600	Weak transcription	NHDF-Ad	bronchial
25	chr1:168225200-168230200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr1:168225200-168233000	Weak transcription	Thymus	Thymus
27	chr1:168225200-168233200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr1:168225200-168234000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr1:168225200-168234200	Weak transcription	Gastric	stomach
30	chr1:168225600-168229400	Weak transcription	HUVEC	blood vessel
31	chr1:168225600-168235800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:168225600-168236000	Weak transcription	K562	blood
33	chr1:168225600-168236200	Weak transcription	A549	lung
34	chr1:168225600-168236800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr1:168225800-168229600	Weak transcription	Primary T cells from cord blood	blood
36	chr1:168225800-168229800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:168225800-168230600	Weak transcription	Colon Smooth Muscle	Colon
38	chr1:168225800-168232600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:168225800-168232800	Weak transcription	Dnd41	blood
40	chr1:168225800-168234800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr1:168226000-168230000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr1:168226000-168230400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr1:168226000-168233600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:168226200-168228800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr1:168226200-168229600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr1:168226200-168229600	Weak transcription	Fetal Muscle Leg	muscle
47	chr1:168226200-168229800	Weak transcription	Adipose Nuclei	Adipose
48	chr1:168226200-168230000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:168226200-168230000	Weak transcription	Aorta	Aorta
50	chr1:168226200-168230200	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links