Variant report
| Variant | rs34887792 |
|---|---|
| Chromosome Location | chr4:105997316-105997317 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:105987968..105989639-chr4:105996681..105999010,2 | MCF-7 | breast: | |
| 2 | chr17:59479989..59482835-chr4:105995713..105997792,2 | MCF-7 | breast: | |
| 3 | chr4:105995843..105998035-chr4:106066095..106068539,2 | MCF-7 | breast: | |
| 4 | chr4:105990116..105992882-chr4:105997268..105998884,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168769 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10010512 | 0.95[EUR][1000 genomes] |
| rs10015876 | 0.95[EUR][1000 genomes] |
| rs12710978 | 0.96[EUR][1000 genomes] |
| rs13116642 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17035227 | 0.96[EUR][1000 genomes] |
| rs28763330 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs28789413 | 0.95[EUR][1000 genomes] |
| rs28821280 | 0.94[EUR][1000 genomes] |
| rs34463758 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs66530760 | 0.95[EUR][1000 genomes] |
| rs6811026 | 0.96[EUR][1000 genomes] |
| rs6823769 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6837188 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461609 | chr4:105869548-106366209 | Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv470063 | chr4:105869548-106366209 | Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 3 | nsv595007 | chr4:105869548-106366209 | Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 4 | nsv830024 | chr4:105884350-106037816 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 5 | nsv830025 | chr4:105988876-106137946 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:105996800-105998600 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
