Variant report

Variant	rs34898281
Chromosome Location	chr3:134545955-134545956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13068347	0.84[EUR][1000 genomes]
rs13078595	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34201825	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34226152	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34765827	0.84[EUR][1000 genomes]
rs34800270	0.84[EUR][1000 genomes]
rs35223707	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35580221	0.84[EUR][1000 genomes]
rs6439530	0.84[EUR][1000 genomes]
rs6772947	0.81[ASN][1000 genomes]
rs6782516	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6789449	0.88[ASN][1000 genomes]
rs6796514	0.88[ASN][1000 genomes]
rs6802089	0.88[ASN][1000 genomes]
rs7645510	0.88[ASN][1000 genomes]
rs7653227	0.87[ASN][1000 genomes]
rs885594	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814062	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134529600-134546400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:134534800-134546000	Weak transcription	Right Atrium	heart
3	chr3:134541200-134547400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:134543800-134546000	Weak transcription	Fetal Brain Male	brain
5	chr3:134544000-134546800	Weak transcription	Fetal Brain Female	brain
6	chr3:134544400-134546200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:134545600-134546000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:134545600-134547600	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links