Variant report

Variant	rs6782516
Chromosome Location	chr3:134557471-134557472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11928990	0.89[CHB][hapmap]
rs12489360	0.81[JPT][hapmap]
rs12489463	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs12496060	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs13068347	0.80[EUR][1000 genomes]
rs13072597	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs13073341	0.88[JPT][hapmap]
rs13073658	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs13078595	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13078906	0.81[JPT][hapmap]
rs13079457	0.89[CHB][hapmap]
rs13090529	0.89[CHB][hapmap]
rs13090749	0.89[CHB][hapmap]
rs13090758	0.89[CHB][hapmap]
rs13091440	0.89[CHB][hapmap]
rs1399706	0.81[JPT][hapmap]
rs1515366	0.81[JPT][hapmap]
rs1949305	0.89[CHB][hapmap]
rs2280157	0.88[JPT][hapmap]
rs2292659	0.89[CHB][hapmap]
rs2292660	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs34201825	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34226152	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34765827	0.80[EUR][1000 genomes]
rs34800270	0.80[EUR][1000 genomes]
rs34898281	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35223707	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35580221	0.80[EUR][1000 genomes]
rs3732569	0.89[CHB][hapmap]
rs6439529	0.89[CHB][hapmap]
rs6439530	0.80[EUR][1000 genomes]
rs6762261	0.89[CHB][hapmap]
rs6772947	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6789449	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs6793377	0.81[JPT][hapmap]
rs6793813	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs6796514	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs6802089	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs7634094	0.89[CHB][hapmap]
rs7643782	0.81[JPT][hapmap]
rs7645510	0.88[ASN][1000 genomes]
rs7645886	0.81[JPT][hapmap]
rs7653227	0.86[JPT][hapmap];0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs885594	0.93[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814062	0.88[ASN][1000 genomes]
rs9825632	0.88[JPT][hapmap]
rs9825687	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134546000-134558000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:134549800-134569400	Weak transcription	Fetal Brain Male	brain
3	chr3:134554400-134558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:134554600-134560000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:134555000-134558000	Weak transcription	Fetal Brain Female	brain

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