Variant report

Variant	rs6762261
Chromosome Location	chr3:134591138-134591139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11706968	0.90[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11928990	0.89[CHB][hapmap]
rs12489463	0.81[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap]
rs12496060	0.88[CHB][hapmap]
rs13068347	0.87[JPT][hapmap]
rs13072597	0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs13072762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13073658	0.89[CHB][hapmap];0.86[MEX][hapmap]
rs13078595	0.81[JPT][hapmap]
rs13079457	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13090529	0.89[CHB][hapmap]
rs13090749	0.89[CHB][hapmap]
rs13090758	0.89[CHB][hapmap]
rs13091440	0.89[CHB][hapmap];0.86[MEX][hapmap]
rs1399707	0.90[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs1515367	0.90[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1949305	0.89[CHB][hapmap]
rs2280156	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2292659	0.89[CHB][hapmap];0.84[YRI][hapmap]
rs2292660	0.89[CHB][hapmap]
rs34287501	0.82[EUR][1000 genomes]
rs34640730	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35287767	0.82[ASN][1000 genomes]
rs3732569	0.89[CHB][hapmap]
rs60531499	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6439529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439530	0.87[JPT][hapmap]
rs6762621	0.86[JPT][hapmap]
rs6782516	0.89[CHB][hapmap]
rs6785725	0.82[EUR][1000 genomes]
rs6789763	0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs6793813	0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs6797353	0.82[EUR][1000 genomes]
rs7639520	0.80[JPT][hapmap]
rs9874291	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134586400-134593400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:134588400-134593600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:134589000-134593600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:134589000-134602600	Weak transcription	Psoas Muscle	Psoas
5	chr3:134589600-134592800	Weak transcription	GM12878-XiMat	blood
6	chr3:134590200-134593800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:134590800-134591200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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