Variant report

Variant	rs1515367
Chromosome Location	chr3:134592440-134592441
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11706968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489463	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs13072597	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs13073341	0.83[JPT][hapmap]
rs13079457	0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs1399706	0.88[JPT][hapmap]
rs1399707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399710	0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1515366	0.88[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs2280157	0.83[JPT][hapmap]
rs2895696	0.81[JPT][hapmap]
rs35287767	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4955458	0.87[JPT][hapmap]
rs4955508	0.81[JPT][hapmap]
rs4955510	0.87[JPT][hapmap]
rs6439529	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs6762261	0.90[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs6762621	0.81[JPT][hapmap]
rs6789763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6793377	0.88[JPT][hapmap]
rs6793813	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7639520	0.87[JPT][hapmap]
rs868130	0.81[JPT][hapmap]
rs884381	0.81[JPT][hapmap]
rs938382	0.81[JPT][hapmap]
rs9814692	0.80[JPT][hapmap]
rs9819889	0.81[JPT][hapmap]
rs9825632	0.83[JPT][hapmap]
rs9851596	0.81[JPT][hapmap]
rs9868348	0.89[CHD][hapmap];0.87[JPT][hapmap]
rs9874291	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134586400-134593400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:134588400-134593600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:134589000-134593600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:134589000-134602600	Weak transcription	Psoas Muscle	Psoas
5	chr3:134589600-134592800	Weak transcription	GM12878-XiMat	blood
6	chr3:134590200-134593800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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